Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01913 ATGAATGTCCAAGATATAATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACATCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTCGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1026 47.08 MNVQDIMETRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTSADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33858466 33859572 + ClCG01G019630.2 Cla01g01913 265502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01913 341 Pfam ZF-HD protein dimerisation region 134 186 IPR006456 -
Cla01g01913 341 Gene3D - 266 338 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 20 47 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 86 103 - -
Cla01g01913 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 136 185 IPR006456 -
Cla01g01913 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 339 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 73 103 - -
Cla01g01913 341 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 135 186 IPR006456 -
Cla01g01913 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 60 339 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 1 54 - -
Cla01g01913 341 SUPERFAMILY Homeodomain-like 273 338 IPR009057 -
Cla01g01913 341 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 277 334 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01913 - - - csv:101220687 595.119
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01913 Cla07g00812 CCT
Cla01g01913 Cla07g00812 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01913 Cla-Chr1:33858466 Cla11g00012 Cla-Chr11:134411 8.74E-52 dispersed
Cla04g01199 Cla-Chr4:27145117 Cla01g01913 Cla-Chr1:33858466 1.88E-23 dispersed
Cla01g01807 Cla-Chr1:32993107 Cla01g01913 Cla-Chr1:33858466 2.49E-60 transposed
Cla10g00822 Cla-Chr10:18738109 Cla01g01913 Cla-Chr1:33858466 2.22E-49 transposed
Cla01g01913 Cla-Chr1:33858466 Cla07g00812 Cla-Chr7:22610573 5.50E-59 wgd
Cla01g01913 Cla-Chr1:33858466 Cla08g01483 Cla-Chr8:27702836 5.62E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60484 PF04770 ZF-HD_dimer 1.00E-30 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01913 Cla_Chr01 FPKM 0.0 0.0 1.175695 0.543854 0.0 0.0 0.148134 2.157199 1.899972 2.052788