Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01913 ATGAATGTCCAAGATATAATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACATCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTCGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1026 47.08 MNVQDIMETRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTSADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33858466 33859572 + ClCG01G019630.2 Cla01g01913 265502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01913 341 Pfam ZF-HD protein dimerisation region 134 186 IPR006456 -
Cla01g01913 341 Gene3D - 266 338 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 20 47 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 86 103 - -
Cla01g01913 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 136 185 IPR006456 -
Cla01g01913 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 339 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 73 103 - -
Cla01g01913 341 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 135 186 IPR006456 -
Cla01g01913 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 60 339 - -
Cla01g01913 341 MobiDBLite consensus disorder prediction 1 54 - -
Cla01g01913 341 SUPERFAMILY Homeodomain-like 273 338 IPR009057 -
Cla01g01913 341 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 277 334 IPR006455 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01913 Cla07g00812 CCT
Cla01g01913 Cla07g00812 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01913 Cla-Chr1:33858466 Cla11g00012 Cla-Chr11:134411 8.74E-52 dispersed
Cla04g01199 Cla-Chr4:27145117 Cla01g01913 Cla-Chr1:33858466 1.88E-23 dispersed
Cla01g01807 Cla-Chr1:32993107 Cla01g01913 Cla-Chr1:33858466 2.49E-60 transposed
Cla10g00822 Cla-Chr10:18738109 Cla01g01913 Cla-Chr1:33858466 2.22E-49 transposed
Cla01g01913 Cla-Chr1:33858466 Cla07g00812 Cla-Chr7:22610573 5.50E-59 wgd
Cla01g01913 Cla-Chr1:33858466 Cla08g01483 Cla-Chr8:27702836 5.62E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60484 PF04770 ZF-HD_dimer 1.00E-30 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01913 - - csv:101220687 595.119