Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01915 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATATTACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTTAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATGGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.81 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDILRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQEWGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33870182 33872178 - ClCG01G019650.2 Cla01g01915 265504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01915 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Cla01g01915 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Cla01g01915 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cla01g01915 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Cla01g01915 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cla01g01915 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cla01g01915 413 Pfam Tub family 116 408 IPR000007 -
Cla01g01915 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Cla01g01915 413 Pfam F-box domain 55 102 IPR001810 GO:0005515
Cla01g01915 413 MobiDBLite consensus disorder prediction 278 300 - -
Cla01g01915 413 MobiDBLite consensus disorder prediction 22 46 - -
Cla01g01915 413 Gene3D - 48 101 - -
Cla01g01915 413 PANTHER TUBBY-RELATED 1 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01915 Cla-Chr1:33870182 Cla06g00505 Cla-Chr6:6119251 4.26E-148 dispersed
Cla01g01915 Cla-Chr1:33870182 Cla05g01926 Cla-Chr5:31115517 1.66E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60485 PF01167 Tub 1.20E-101 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01915 K19600 - csv:101221704 784.637