Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01915 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATATTACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTTAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATGGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.81 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDILRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQEWGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33870182 33872178 - ClCG01G019650.2 Cla01g01915 265504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01915 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Cla01g01915 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Cla01g01915 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cla01g01915 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Cla01g01915 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cla01g01915 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cla01g01915 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cla01g01915 413 Pfam Tub family 116 408 IPR000007 -
Cla01g01915 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Cla01g01915 413 Pfam F-box domain 55 102 IPR001810 GO:0005515
Cla01g01915 413 MobiDBLite consensus disorder prediction 278 300 - -
Cla01g01915 413 MobiDBLite consensus disorder prediction 22 46 - -
Cla01g01915 413 Gene3D - 48 101 - -
Cla01g01915 413 PANTHER TUBBY-RELATED 1 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01915 K19600 TUB, TULP; tubby and related proteins - csv:101221704 784.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01915 Cla-Chr1:33870182 Cla06g00505 Cla-Chr6:6119251 4.26E-148 dispersed
Cla01g01915 Cla-Chr1:33870182 Cla05g01926 Cla-Chr5:31115517 1.66E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00355 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 7.2e-178 620.5
Cla08g00713 . 1 452 TUB Transcription Factor Family AT1G76900 65.8 7.0e-165 577.4
Cla05g01062 . 1 494 TUB Transcription Factor Family AT1G76900 60.9 5.2e-160 561.2
Cla06g00505 CCT,ECH 13 386 TUB Transcription Factor Family AT1G76900 50.9 1.1e-114 410.6
Cla05g01062 . 240 494 TUB Transcription Factor Family AT1G25280 74.3 8.4e-102 367.1
Cla08g00355 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.9e-94 341.3
Cla08g00713 . 195 452 TUB Transcription Factor Family AT1G25280 70.0 2.1e-92 335.9
Cla06g00505 CCT,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.9 1.4e-67 253.4
Cla05g00612 CCT,ECH 168 413 TUB Transcription Factor Family AT1G25280 51.3 2.3e-67 252.7
Cla05g01926 . 340 567 TUB Transcription Factor Family AT1G25280 53.8 1.5e-66 250.0
Cla01g01915 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.2e-63 240.4
Cla06g00505 CCT,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.8 1.1e-99 360.1
Cla05g00612 CCT,ECH 98 413 TUB Transcription Factor Family AT5G18680 57.7 2.6e-91 332.4
Cla08g00355 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.9e-84 308.5
Cla08g00713 . 129 452 TUB Transcription Factor Family AT5G18680 50.3 7.4e-83 304.3
Cla01g01915 . 1 413 TUB Transcription Factor Family AT2G18280 61.3 1.7e-138 489.6
Cla05g01926 . 107 567 TUB Transcription Factor Family AT2G18280 52.3 1.5e-118 423.3
Cla08g00355 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.3e-116 416.0
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.5 3.1e-113 405.6
Cla05g00612 CCT,ECH 1 413 TUB Transcription Factor Family AT2G18280 51.0 8.6e-111 397.5
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.5 4.6e-160 561.2
Cla05g00612 CCT,ECH 1 413 TUB Transcription Factor Family AT2G47900 64.4 1.2e-155 546.6
Cla08g00355 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.1e-132 470.3
Cla08g00713 . 1 452 TUB Transcription Factor Family AT2G47900 54.1 1.0e-127 453.8
Cla01g01915 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 2.9e-114 409.1
Cla07g00980 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.4e-100 362.8
Cla09g00311 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 9.0e-73 270.8
Cla08g00355 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cla08g00713 . 65 452 TUB Transcription Factor Family AT1G43640 62.4 1.3e-137 486.5
Cla05g01062 . 66 494 TUB Transcription Factor Family AT1G43640 57.6 2.2e-137 485.7
Cla06g00505 CCT,ECH 49 386 TUB Transcription Factor Family AT1G43640 52.9 3.4e-106 382.1
Cla05g01926 . 140 567 TUB Transcription Factor Family AT1G47270 56.2 1.4e-126 449.9
Cla01g01915 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 3.1e-121 432.2
Cla08g00355 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.0e-112 402.9
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT1G47270 51.0 4.2e-110 395.2
Cla08g00713 . 48 452 TUB Transcription Factor Family AT1G47270 52.3 2.3e-108 389.4
Cla07g00980 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.6e-152 533.5
Cla06g00505 CCT,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.1 3.7e-95 345.1
Cla05g00612 CCT,ECH 98 413 TUB Transcription Factor Family AT3G06380 58.9 8.5e-92 334.0
Cla08g00713 . 132 452 TUB Transcription Factor Family AT3G06380 51.4 8.8e-81 297.4
Cla08g00355 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.4e-80 295.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60485 PF01167 Tub 1.20E-101 CL0395 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01915 Cla_Chr01 FPKM 1.071651 0.22832 0.684649 0.815329 0.417442 0.0 0.0 0.253496 0.0 0.35337