Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01915 | ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATATTACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTTAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATGGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG | 1242 | 45.81 | MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDILRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQEWGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33870182 | 33872178 | - | ClCG01G019650.2 | Cla01g01915 | 265504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01915 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 413 | IPR025659 | - | |
Cla01g01915 | 413 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 413 | - | - | |
Cla01g01915 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Cla01g01915 | 413 | Gene3D | Tubby Protein; Chain A | 113 | 413 | IPR025659 | - | |
Cla01g01915 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Cla01g01915 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Cla01g01915 | 413 | Pfam | Tub family | 116 | 408 | IPR000007 | - | |
Cla01g01915 | 413 | SUPERFAMILY | F-box domain | 49 | 98 | IPR036047 | GO:0005515 | |
Cla01g01915 | 413 | Pfam | F-box domain | 55 | 102 | IPR001810 | GO:0005515 | |
Cla01g01915 | 413 | MobiDBLite | consensus disorder prediction | 278 | 300 | - | - | |
Cla01g01915 | 413 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
Cla01g01915 | 413 | Gene3D | - | 48 | 101 | - | - | |
Cla01g01915 | 413 | PANTHER | TUBBY-RELATED | 1 | 413 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01915 | Cla-Chr1:33870182 | Cla06g00505 | Cla-Chr6:6119251 | 4.26E-148 | dispersed | |
Cla01g01915 | Cla-Chr1:33870182 | Cla05g01926 | Cla-Chr5:31115517 | 1.66E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60485 | PF01167 | Tub | 1.20E-101 | CL0395 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01915 | K19600 | - | csv:101221704 | 784.637 |