Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01917 ATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCATTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGCTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGATTCGAACGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCCACGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCAACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCGGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTATAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCGGTCGACAACAAACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGGCGGCGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACAAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAAAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCAAGACCGAGTTAGGGGACCGAGTCAGGCACGAATCAGTGATGGATATACAGAGGAGTCTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 2151 45.75 MEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISFSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVHGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVNKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVAVDCECAYGRSFLLNYKILDPDEGAFGLAMSSSVDNKLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGGGGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSKTELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33882841 33887983 - ClCG01G019670.2 Cla01g01917 265506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01917 716 SMART SynN_4 454 581 IPR006011 GO:0016020
Cla01g01917 716 SMART tSNARE_6 617 684 IPR000727 -
Cla01g01917 716 MobiDBLite consensus disorder prediction 431 450 - -
Cla01g01917 716 Gene3D - 454 585 - -
Cla01g01917 716 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 628 684 IPR000727 -
Cla01g01917 716 Pfam Eukaryotic protein of unknown function (DUF829) 143 371 IPR008547 -
Cla01g01917 716 CDD SynN 462 609 IPR006011 GO:0016020
Cla01g01917 716 CDD SNARE_syntaxin1-like 628 681 - -
Cla01g01917 716 Pfam Syntaxin 462 657 IPR006011 GO:0016020
Cla01g01917 716 Coils Coil 466 486 - -
Cla01g01917 716 Gene3D - 620 715 - -
Cla01g01917 716 PANTHER SYNTAXIN 414 712 IPR045242 -
Cla01g01917 716 SUPERFAMILY t-snare proteins 458 677 IPR010989 GO:0016020|GO:0016192
Cla01g01917 716 Coils Coil 555 575 - -
Cla01g01917 716 PANTHER SYNTAXIN-112 414 712 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00795 Cla-Chr1:9274794 Cla01g01917 Cla-Chr1:33882841 5.55E-66 dispersed
Cla01g01917 Cla-Chr1:33882841 Cla04g00533 Cla-Chr4:18913942 4.53E-67 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01917 K08486 - csv:101222646 612.068