Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01919 ATGTGTCCAGCTTTGAACTTAATGAAGCAGAGGAAGGATGGTTACGAACCGTCTGATACTGAGACAGAATGGCAAGAAAGCCCTTGGAATGACCCTAAGGAGAAGAAACTTGTACTGGATTATAATAATCGAAGAACTGATTCGGCAGTATCCAAGAAGTTCAATGCTGTGGCGAATGTTTCTCCTCCTAGTTTGAGAAGAAACGGTGGCAAAACGCCTCATAGGTCAGCTAAAGACGACAGTGTTCTTGTTATGCTTCAGAGAAACATCAGCCCCTTGTCAAGAGCAGAAAGAAGAAGACACGAGTCTCCTTTTAAAGCTGGGGGGGAGGAAATTGGAAGCTCTAGCATGAGGTCAAGAAAAGAGGAGAAGTTGACTTCTTCTCATGGGAGTAACAGAATAAGTCAAAAACCAGGCTACAGTAGGAGATCAGTGACTGCTCCAAGGTTGAGGATGAGAGATGAACATATGATTGCGGTAAATGATTTGTCTCAGAGGAGAGAGAGAGCAGCTCCAACCTTGAAGGTCAGCTCCATCCTGCAACAGCCAAAGGAGGTTTCCCAGGTGAATTCTCTATCTATTGGTGAAATGAATGAGATGATTGCAGATGGAAGGATTAATAGAGGTTTGGCTTTTAAAGACCCGGCGGTTGAAAGCACGGGGTCGATCTCGCCAGGGGATATTTTCTTTTCGCGTGATGGCTTGCCTATTGGGATGAATAACAATGTCACAGCAAAGAGAAATGCGTTCAAAAACTATATAAGTCCAAAGCCTACATTTGTGTCTAAAAAGAATGATGATACTTATAATCAAGTGGAAGTAAATGCTAGTTGTAGAGGGGTTTCTTCTGCTGGAGCAGGTTTGTCAACGACCACTACCAGTAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCATTGAAAATAGTAAGATCAGCGATGTGAGTGGAAGAACAAGTGAAAGTACTAGAAGGTTTGTAGCCAATAGACGAAAGAAGAGGAATGATATATGGTTTTCTTGTATGAGGAATGGGACTTGCAGGACAACAAAATCGCCTGAAAAGCAACCATTTGATGAAGCTTTATATATTGAAAAGGCAAATGTTGTTGAATACTTGAAACCCTTCTGGGCGGATCAGCATCGGCCAGTTTCCTTAAATGGGTTCACTTTCCATAAGCATGAGGCCCAACTTCTCAAGCAATTAGTTTCACAGGACAGTTTTCCCCACATTCTCTTCAAAGGTCCAAGTGGATCTGGCAAAAGAGTGCTGATGATGGCTCTTCTGCGTGAGATATATGGTGATTCATGTTGGAATGTTTCTCATGATTTGCGACGTTTCCAGATTCAGGAAAGAAAACTGACGCAAGTCTTCGTTCCATTGACATCAAGTGCTCACCATGTGGAGCTAAATCTAAGCTCCGAAGCAAATGCTAAGTATGCTTTGCTGGGATTGGCTAAAGAAATAGGAAGTGAATATTCCATTAATATGGAAGCAAGAAATGTCAATCCGAAGGCAAACTTCAAAGTGGTAGTCCTTTTAGATGTAGACAAAGCCGCAGAGGATATTCAGCACTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCCTGCAAAGTAGTACTCTGTTGTGAAGACGACACAGGCATCCTTGAATCGGTGATAAGCCGCTGCAAAGTTATTAAAATTAACCCTCCTGTAACTCATGAAATCATGGATGTCCTTATCCAAATAGCAGAGAAGGAGGAATTCGACTTACCCATGAACTTTGCTTCTAAGATAGCTACTAAAGCAAAGCAAAACCTGAGAAGAGCAATCATGGCGCTTGAAGCATGCAAGGCACACAACTATCCATTTTCTGATGACCAGCCAATCCCTATTGGATGGGAAGATGCCGTGGTAGAACTCGCAGCCCATATCCTCGAAGACCCATCGAATCCAAAATTATACCAAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCAGTTCATCCTAAACTAATTCTCCAGAAGCTTGTAGAACAATTTCTGAAAAGAATTGAGCTGAGATCAAGGAGGGAACTTTATTATTGGCATGCTTACTATAACAAGAGACTCCCAACTGAAACTGGAACAGGCGCTTTACCCAAATTGGAAGAATTTGTGGCAAAGTTCATGAGCATGTACAGGAAGAGCTCCACCAACTACTCAGAGAGTGATCAATCCTTCAAGGTGAATATGGAAAACAGTGCTGGAGGAGGAAATTCTGCAAATATCGGATTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCATGTCTCGAAGATCTGTCGCCGCTCACCCTTGGCACGATTTGGAGATTGGACCTGGTGCACCGTCAGTTTTCAATTGTGTTGTTGAAATTGGCAAAGGCAGCAAGGTTAAATACGAGCTTGACAAGGCCAGTGGCCTTATCAAAGTCGACCGCGTACTTTACTCATCAGTTGTTTACCCACACAATTATGGTTTCATCCCACGTACAATTTGTGAAGACAGTGATCCTATGGATGTTTTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGATCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCACTATACAGACATCAAGGAGATTCCCCCACACCGGCTAGCCGAAATTCGCCGATTCTTCGAGGACTACAAGAAGAACGAAAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCGGAGGCTGCCACTGATGCCATCAAGTACTCCATGGATTTGTATGCTGCCTACATAGTTGAAAGCTTGAGGCATCTTATCTCTTGCTCTCACTCATCGGAGTTGGTCGTGTCGGAGTTTGGAGTCTTCGTGTCGAAGAAGAAGAAGCTAGAGAAGAATTCGGAGAAGAAGAAAAAGAAAAGAGGAAAAAAAGAAGAAGAAGAAGAAGAAAGGGACAGAGAGGGAGTCACGGAGAAAAGAAAAAAAGAAAAAAGGAAAAAGAGAAAGAAGAAAACCGATTGGAGATGTGGGAAAATCGTGGACCCAATCCATGATTTGCATGCCATGTAG 3120 42.79 MCPALNLMKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVSKKFNAVANVSPPSLRRNGGKTPHRSAKDDSVLVMLQRNISPLSRAERRRHESPFKAGGEEIGSSSMRSRKEEKLTSSHGSNRISQKPGYSRRSVTAPRLRMRDEHMIAVNDLSQRRERAAPTLKVSSILQQPKEVSQVNSLSIGEMNEMIADGRINRGLAFKDPAVESTGSISPGDIFFSRDGLPIGMNNNVTAKRNAFKNYISPKPTFVSKKNDDTYNQVEVNASCRGVSSAGAGLSTTTTSSAAVSRENSSRISIENSKISDVSGRTSESTRRFVANRRKKRNDIWFSCMRNGTCRTTKSPEKQPFDEALYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPSGSGKRVLMMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINMEARNVNPKANFKVVVLLDVDKAAEDIQHLLRWIMDGYKDACKVVLCCEDDTGILESVISRCKVIKINPPVTHEIMDVLIQIAEKEEFDLPMNFASKIATKAKQNLRRAIMALEACKAHNYPFSDDQPIPIGWEDAVVELAAHILEDPSNPKLYQVKEKIQKLLVDSVHPKLILQKLVEQFLKRIELRSRRELYYWHAYYNKRLPTETGTGALPKLEEFVAKFMSMYRKSSTNYSESDQSFKVNMENSAGGGNSANIGFPRIRLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAATDAIKYSMDLYAAYIVESLRHLISCSHSSELVVSEFGVFVSKKKKLEKNSEKKKKKRGKKEEEEEERDREGVTEKRKKEKRKKRKKKTDWRCGKIVDPIHDLHAM 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33898077 33907788 + ClCG01G019690.2 Cla01g01919 265508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01919 1039 PANTHER OS02G0704966 PROTEIN 188 730 - -
Cla01g01919 1039 Coils Coil 977 1016 - -
Cla01g01919 1039 MobiDBLite consensus disorder prediction 93 107 - -
Cla01g01919 1039 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 188 730 - -
Cla01g01919 1039 SUPERFAMILY post-AAA+ oligomerization domain-like 629 724 IPR008921 GO:0003677|GO:0006260
Cla01g01919 1039 MobiDBLite consensus disorder prediction 990 1009 - -
Cla01g01919 1039 CDD pyrophosphatase 791 943 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cla01g01919 1039 Gene3D - 376 567 IPR027417 -
Cla01g01919 1039 Gene3D - 629 724 - -
Cla01g01919 1039 ProSitePatterns Inorganic pyrophosphatase signature. 841 847 - -
Cla01g01919 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 613 IPR027417 -
Cla01g01919 1039 MobiDBLite consensus disorder prediction 981 1023 - -
Cla01g01919 1039 Hamap Inorganic pyrophosphatase [ppa]. 790 946 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cla01g01919 1039 MobiDBLite consensus disorder prediction 1 31 - -
Cla01g01919 1039 CDD AAA 395 562 - -
Cla01g01919 1039 MobiDBLite consensus disorder prediction 90 143 - -
Cla01g01919 1039 Gene3D Inorganic pyrophosphatase 773 951 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cla01g01919 1039 Pfam Inorganic pyrophosphatase 794 945 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cla01g01919 1039 SUPERFAMILY Inorganic pyrophosphatase 771 952 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cla01g01919 1039 Gene3D - 569 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01919 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101218071 1349.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01919 Cla-Chr1:33898077 Cla04g00832 Cla-Chr4:23344899 3.54E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01919 Cla_Chr01 FPKM 9.570968 10.293356 6.503606 7.698804 14.604048 12.611142 15.279935 7.458221 8.78828 7.923713