Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01920 ATGGATAATCTCTCACATTCTCGTCTCTCCAACAGGGGTTCTACCTCGCTTTCTAAGAAAATCTGTAATGGCAGTAATGGCGGTGGTCCTTTTGTAGCTCAAACTATCTACGACGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTTCGTGCTTCCTCGATTCCGATTCTTGATCTTCCTGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTATTCGGAAGTTTTTGGCGGGTTTGATGGTCTGGATTTTGCGATTTCTTATGACGAACTGGTTGGTCCATCCAAGGCCGTTGATGATGGCTCTTCCGACGAAGCTTGGTACGACTACGTTTATATTCTGCCGGATACTTCTCGGTTTTGGGCATTACTTATGGCTAACATTTTGGAATGTTCCTATTTTTTGGTTTGGAATGCGGGCAGTCGAAGGGTGAAGGTGATGTACTTAATGGTAGAATGCGGTTGTCTTGCTTTTGTCATTCACAGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAATCAGTCATTTGGAGGAAGCACTGAGTTTTGCATATCGTATAACAAGGTTAACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCGTCCTGGATTCTCATATCTGGTTGATGAAGCAAACCCCTCGCCGAAGGCAACAGATGATGATCCATCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGAACACAATGCCACCCCTAGTGGACAGTAATGACTCTGGACCGTTATTCGAGGATAGCCTTATTTCTCAAAATGGATGTGGTAGAGATGTTTGTCATTCTCACGAGGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCGCCTTCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGGGGGACTACTCTAAAAGGACTTTGAGTTGTGGGGAAGCTGCTTCTGAAATAATTTCGGACGACCATTCTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCGATGAAAGAAGCAATGGATAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGGGGAGGAAGAAGGAAGGGGTCCATGGACGGATGAGACTGGATTCAAGAAATGATATGAGAGAAAAGGAAGGAAATTTGACTAAGATTCCAAATCGATTTAAGAGTTGGGCCAATGAAAGTGCGCAGGGTATTGGGGAAATTCATGGCAACGAAATGAATTTGCCTGCTAGAGAGGAGAGGCACAAGGATGTGAGGGCAACTGAAGTTTGTTCAACACACTATGGAGAAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTATCAATTAGAAGTGGGAGTAGATTTCTTGTGTCCGAGAACTATGATTGTTGCAGTGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCTGAAAAGGAATTTGAGTCGCTGAGTAATGATGCAATTTCCAACTTTGTGACTGGACAAATGGAAATAGAGACCAATGCATGGGAGAACGATAAAGACCAAGACAAGAAAGCAAAACCATTCCATACAGCTCATGTTCTGAATGAGGAGGTGAAGCATTTGGAGAATCTGGTCCAGGGAAAGGAGGAAGATAAGATAAAACGAAAGCCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCACCAAGGTGTTTGTGATCTTGAAGCAAATGATAGAAAATTTGAAGTTGCTCAAGAGTTTACGGAAGTAAAAAAGCAAATGTTTTATGCTAGTGAACCAGAGAAACGTGAAAAGCCTATTGAGTTTAGACAACTGGACAGTGAGCTAAAAGTTGAGCAACCTGTTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGAAAGAAAGGAAAATGGAAATATTCTCAAGGAGTCTCATAGAAAAGAAAACAATGCAAACAAAATGGAAGCCACTGAGAATGAGAAAAGAGAGATGCCCACAGAGGCTTCTGAAAGGGAAAAACTTGAGCAAAAAATGAAGGTGTTCTTTGAGCAACCAGATGATAAGAAAAGACTGAATTTGGTTCTTGAGGACGACAACTTTAAGGGACAGATGGATCATGAAAGACAACTGGAAGGAGTTCATGGGATGGAAGATCATGGGGAAAGGGGAAAGGAGGCTGCCAAAGTTGGAGTAAGTGAGACACCTGAATTAGCTCATGAGAGAGAAGATGGCAACAAATGGCCACAAGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTTGATGATTCATTTCAGCATTTGAACATTGAAGGCATGCCAAGAGATGTGGGTAAGTGTAAAGTGACTCCGATGTTGGTTAAAGATTCACAAGATAGCGCAGATCTCAAGGGTACAAGTTTGGAGTATGATGAATTAGAGACATTGGAGGACAGACACAAAGTAAATTCAACAATAGGATCTCAAGTATATGTGGAAGTGAGTGATTTGGGGACATCTGCTGCTGCATGTCAAATGAACAATGACAAAGACCATTTACCTATGGGACTAGCATGTCCAACGGGAATGTCTGAAGAATTCTCTGTTGTAGATGAAAGTGGAGAGAGGAAGACCATAGTTACAGTTAATGAAAATCTTCAATTTAACAAAAATCCTTGTGTGCCGAGTGTATGCCAGGCAGAGGTAGAACACTGTAAACTTCCAGTTGAAATGGAAGATGCAGATATTCAACTTTCTTTTGATGAATTGACTAAAAGAGCAGCCAAAGAAACAGGCTTTCAGCCCGGACCTGGACATACACAATCAGAACCAACTAATTCGGAAGATGCACTTTCATCTGAAAACTCAACATGCATGGATGCGGGAGAGAACGTAGTTAAGATTGAAGATATGAAAACATCACTTCCTCTGGACAGAAGCAATGAGAAAGCAGGACAGGCTGATGAATGCATGGAAGAGTTTGTAGGGAGAAAGAAGTCTGTTACCAGAATGGGTTCTGATCCTGAACATCCAGGAAGCAACTTGTTCTGTTGTATGGAAGATAAAGTGAAGCCCTCTGACCAAGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGGTCAATGTAAGGGCTGAAAAAGGAAGTGGATTGAAGTCAACTTGGCCAAATATTTCAGAAAGGACGCAGAAGAGTGGGGAATTCTCCCGTGAGGTCAATGCAAATCAGGCCCCAGAAAGAAAGGAAAAGATTGTAAACCAGAGCCATACATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGTGAAGCAGAATTTGAGAACGACATTCTTCGAAGATTGGAAGAAGAGAGGGAGAGGGAAAGAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTTCTCTTGAACCACGAGATAGAGTAGGTACCGAAGCTCGTGAAAGGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGGCTGAGGCACGTGAAAGATTGGAAAAGGCATGTGCAGAGGCGAGAGAAAATTCATTGGCTGGGAAGGCGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCCGCTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCGGAGAAAGCCATGTCTGACAAGACTTCCTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTACAATCTCTGAGCTTTGGCTCTGCTGCGGCTTCAAGATATGCCTACTACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACATTGCAATATATCCTTGCACCTGATAGTGGTTGGCAGCCAATTCCCTTAACAGAAGTTATAACCGCCGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAGTATTCAGCAAAAATATATATGCGAGAAGGTCTTTGATCTACTAAAGAAGGAACTGATGCTTCAGTTGCAGCCTCCATCATTGTTTGTTCACCTGTGGACGAGCATTATGGTGGAGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAGCCTGAGGTCATAG 4554 43.35 MDNLSHSRLSNRGSTSLSKKICNGSNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYSEVFGGFDGLDFAISYDELVGPSKAVDDGSSDEAWYDYVYILPDTSRFWALLMANILECSYFLVWNAGSRRVKVMYLMVECGCLAFVIHRTPAGTESLSDCSDHSGNSHCMSNGDSNQSFGGSTEFCISYNKVNRESNGNISNGKIHVTQLEMRPGFSYLVDEANPSPKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRNTMPPLVDSNDSGPLFEDSLISQNGCGRDVCHSHEDFITVSEISLRTEPSQVPPPSRPPPKFATKKGDYSKRTLSCGEAASEIISDDHSLPLFDVEVDASSSAAASAAAMKEAMDKAQAQLQNAKDLWGRKKEGVHGRMRLDSRNDMREKEGNLTKIPNRFKSWANESAQGIGEIHGNEMNLPAREERHKDVRATEVCSTHYGEEELLTAAEKTVSIRSGSRFLVSENYDCCSEWKDATEFFELARADISEKEFESLSNDAISNFVTGQMEIETNAWENDKDQDKKAKPFHTAHVLNEEVKHLENLVQGKEEDKIKRKPNKNETRQKEQVKLKIHQGVCDLEANDRKFEVAQEFTEVKKQMFYASEPEKREKPIEFRQLDSELKVEQPVSPRDIEQEKKKVERKENGNILKESHRKENNANKMEATENEKREMPTEASEREKLEQKMKVFFEQPDDKKRLNLVLEDDNFKGQMDHERQLEGVHGMEDHGERGKEAAKVGVSETPELAHEREDGNKWPQDFQYREVCEKGVDDSFQHLNIEGMPRDVGKCKVTPMLVKDSQDSADLKGTSLEYDELETLEDRHKVNSTIGSQVYVEVSDLGTSAAACQMNNDKDHLPMGLACPTGMSEEFSVVDESGERKTIVTVNENLQFNKNPCVPSVCQAEVEHCKLPVEMEDADIQLSFDELTKRAAKETGFQPGPGHTQSEPTNSEDALSSENSTCMDAGENVVKIEDMKTSLPLDRSNEKAGQADECMEEFVGRKKSVTRMGSDPEHPGSNLFCCMEDKVKPSDQVEDKGQKVSVQGVNVRAEKGSGLKSTWPNISERTQKSGEFSREVNANQAPERKEKIVNQSHTSKGKESERVRSEAEFENDILRRLEEEREREREREKDRMPIDRISLEPRDRVGTEARERAERAALERMTAEARQRALAEARERLEKACAEARENSLAGKAATMEARVKAERAAVERATAEARERAAEKAMSDKTSFGARERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSLSFGSAAASRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILAPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKKELMLQLQPPSLFVHLWTSIMVEKLGTNSTQRSGSLRS 1517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33917508 33924573 + ClCG01G019710.2 Cla01g01920 265509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1107 1163 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1267 1323 - -
Cla01g01920 1517 SUPERFAMILY Chaperone J-domain 1347 1479 IPR036869 -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1298 1323 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1194 1215 - -
Cla01g01920 1517 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 15 1479 - -
Cla01g01920 1517 Gene3D DnaJ domain 1363 1483 IPR036869 -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 258 311 - -
Cla01g01920 1517 Coils Coil 1216 1243 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1134 1163 - -
Cla01g01920 1517 Coils Coil 1249 1269 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1112 1132 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1267 1297 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 345 367 - -
Cla01g01920 1517 Coils Coil 405 425 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 269 284 - -
Cla01g01920 1517 Coils Coil 1156 1183 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 990 1015 - -
Cla01g01920 1517 PANTHER AUXILIN, ISOFORM A 15 1479 - -
Cla01g01920 1517 Coils Coil 591 611 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 682 740 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 995 1015 - -
Cla01g01920 1517 Coils Coil 1355 1390 - -
Cla01g01920 1517 MobiDBLite consensus disorder prediction 1343 1362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01920 - - - bhj:120074172 2260.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01920 Cla-Chr1:33917508 Cla04g00205 Cla-Chr4:6569199 1.82E-52 dispersed
Cla08g00620 Cla-Chr8:18164315 Cla01g01920 Cla-Chr1:33917508 2.26E-43 transposed
Cla01g01920 Cla-Chr1:33917508 Cla05g01924 Cla-Chr5:31076828 6.83E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01920 Cla_Chr01 FPKM 10.516452 9.427841 9.203773 11.336412 10.747302 11.161383 11.449739 26.520609 27.113823 27.633232