Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01928 ATGATTGTTTCCAATATAATCAAACAAGTAGAAGAGATTCGTCAAAATAAGCTTCACAAAAAGCCTTTGGAGTATCAGATCTTCTTGAATGACCTCCATGGAAATGACTTCAATGCCATCTTTACATCATTGCCAAACTTCCTTGAAGATTTGAGGACCCAAATTGGAGGTGATTTTGGTCTATGTTTCTTCAATGGTGTGCCTGGTTCTTTCTATGCCAGACTCTTTTCCAGCAACACTCTGCATTTTTTTCATTCATCTAGTAGTCTCCATTGGCTCTCTCGGAAGCCGTCGGTGGAAGAATTATTTCGCCGATACAAGAAAATAGTTGCTGATTGCATGGCAAAAGAGAAGACTGAGTTGGAGACAAAAGCTATGCCAAAAATTCCTTACTTCAGGGAAGCCATTGAAGACTTGTGCAGTGAAAACATTCCAATTACCACTTTAAGCATAGCAGATTTGGGATGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTCCATAAAAACCTTCACAACAAACCACTCCAATTTCAAATCTTCTTCAACGATCTCCCTGCAAACGATTTCAATGCCATTTTTAGATCGTTGTCAAATTTGTTGGAAGATTTGAAGAAACAAACTGGAGCTGATTTTGGAAGCTGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAAAAGTTTGCATTTTGTTCATTCTTCTTACAGTCTTCAATGGCTGTCTCAGGTACCTGAAGGGATGGAGATAATAAACAAAGGGAACATATTCACAGACAGTACAAGTCCAGAGAATGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCATTGTTTTTAAAGTGTCGTGGAGAAGAAATAGTAGGTGGTGGACGAATGATTCTTACTATTTCAGGAAGAACAGATGAATATCCACCAAACAAAGATTATTGTTATGCTTTGAAATTTTTTAATTTAGCTCTCAATAACATGGTTGCAGAGGGGATCTTGGAAGAGGAGAAAGTTGATAGATTCAATATTCCAATCTTCATGCCAAATCCAGAGGAAATAAAAGTAGAGGTTTTGAAAGAAGGAAGCTTCATCATAAATTATCTTGAAGTGTCAACAATTGATTGGAACTTCTACAATAATGATGAATTTGATGGATCAAATCGTGAGATAATATCCATGACTTGCTCAATTGCAAAGGAAGCCATTACCAATTTCTACAATCAAAACTTTGTAGCTTCAATAACAATGGCAGACCTGGGTTGTTCTTCAGGATCAAACACTCTAATGATTGTTTCCAATATAATCAAACAAGTAGAAGAGATTCGTCAAAATAAGCTTCACAAAAAGCCTTTGGATCTCCATTGGCTCTCTCGGTGTCGAGGTGAGGAATTGGTAATGGGTGGACGTATGGTTTTAACATTAGTTGGAAGAATAAGTGAAGATCCATCAAAGTCTGGAGCTCACTATATTTTGGAGCTTTTGGCTTTAACTCTCAATACTATGGGAATTGTGGAAGAGAAAATGGCAGATTCATTCAATATTCCAAGCTATATGCCATCGCCAAGGGAAGTGGAAGCGGAGGTTGTGAATGAAGGAAGTTTCATCCTCAATCTATTGGAAGTTTCAAGGATTAACTTAAACATTAACAAAACTGAATCCTGCCCCATGGCCAACACTGATGGCTATGATTTTGCCAAGTGTGTGCAATCTGTGGCTGAACCACTTTTGATTCATCATTTTGGAGAAGCCATTGTGGAAGAGTTATTTTGCCGATACAAGAAAATAGTTGCCGATTGCATGGCAAAAGAGAAGGTTATGGAATGCATCAACCTCACTATCTCATTAACTAAAATCAAATCATCAAAAGTTACTACAACTATTACTATGCCATGTGATGAAAGTTCCAAAAGGTGA 1944 37.45 MIVSNIIKQVEEIRQNKLHKKPLEYQIFLNDLHGNDFNAIFTSLPNFLEDLRTQIGGDFGLCFFNGVPGSFYARLFSSNTLHFFHSSSSLHWLSRKPSVEELFRRYKKIVADCMAKEKTELETKAMPKIPYFREAIEDLCSENIPITTLSIADLGCSSGPNTLMIVSKLIKQFHKNLHNKPLQFQIFFNDLPANDFNAIFRSLSNLLEDLKKQTGADFGSCFFNGVPGSFYGRLFPNKSLHFVHSSYSLQWLSQVPEGMEIINKGNIFTDSTSPENVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMILTISGRTDEYPPNKDYCYALKFFNLALNNMVAEGILEEEKVDRFNIPIFMPNPEEIKVEVLKEGSFIINYLEVSTIDWNFYNNDEFDGSNREIISMTCSIAKEAITNFYNQNFVASITMADLGCSSGSNTLMIVSNIIKQVEEIRQNKLHKKPLDLHWLSRCRGEELVMGGRMVLTLVGRISEDPSKSGAHYILELLALTLNTMGIVEEKMADSFNIPSYMPSPREVEAEVVNEGSFILNLLEVSRINLNINKTESCPMANTDGYDFAKCVQSVAEPLLIHHFGEAIVEELFCRYKKIVADCMAKEKVMECINLTISLTKIKSSKVTTTITMPCDESSKR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33953245 33965393 - ClCG01G019780.1 Cla01g01928 265517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01928 647 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 397 628 IPR029063 -
Cla01g01928 647 Pfam SAM dependent carboxyl methyltransferase 466 627 IPR005299 GO:0008168
Cla01g01928 647 Pfam SAM dependent carboxyl methyltransferase 2 99 IPR005299 GO:0008168
Cla01g01928 647 Pfam SAM dependent carboxyl methyltransferase 410 463 IPR005299 GO:0008168
Cla01g01928 647 Pfam SAM dependent carboxyl methyltransferase 134 391 IPR005299 GO:0008168
Cla01g01928 647 PANTHER OS05G0102000 PROTEIN 125 382 - -
Cla01g01928 647 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 388 459 IPR005299 GO:0008168
Cla01g01928 647 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 125 382 IPR005299 GO:0008168
Cla01g01928 647 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 393 IPR029063 -
Cla01g01928 647 Gene3D Vaccinia Virus protein VP39 398 467 IPR029063 -
Cla01g01928 647 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 98 IPR005299 GO:0008168
Cla01g01928 647 PANTHER OS05G0102000 PROTEIN 467 615 - -
Cla01g01928 647 Gene3D - 478 613 IPR042086 -
Cla01g01928 647 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 98 IPR029063 -
Cla01g01928 647 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 467 615 IPR005299 GO:0008168
Cla01g01928 647 Gene3D Vaccinia Virus protein VP39 1 116 IPR029063 -
Cla01g01928 647 Gene3D Vaccinia Virus protein VP39 122 384 IPR029063 -
Cla01g01928 647 PANTHER OS05G0102000 PROTEIN 388 459 - -
Cla01g01928 647 PANTHER OS05G0102000 PROTEIN 2 98 - -
Cla01g01928 647 Gene3D - 254 391 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01928 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101209890 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01928 Cla-Chr1:33953245 Cla01g01930 Cla-Chr1:33978693 1.20E-11 dispersed
Cla01g01928 Cla-Chr1:33953245 Cla01g01929 Cla-Chr1:33967277 1.34E-11 tandem
Cla01g01928 Cla-Chr1:33953245 Cla05g01919 Cla-Chr5:31042590 2.67E-14 wgd
Cla01g01928 Cla-Chr1:33953245 Cla07g00819 Cla-Chr7:22781897 2.87E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1010 . . . . . . Bma09g00086 . . . . . . . . Cpe19g00820 . . . . . . . . Cla01g01928 . . Cco04g1735 . . Cre04g1586 . . . . . . . . Blo05g00804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03261 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01928 Cla_Chr01 FPKM 85.726021 83.147324 118.12252 115.426331 149.083298 152.433548 163.957016 196.658859 211.708069 210.921829