Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01929 ATGGAGGTTTCCAAAATACTCCATATGAATTCAGGAGTTGGAGACAAAAGCTATGCCAAAAATTCCTTACTTCAGCAAAAGGCAATATCTATGGCGTGGCCAATCATAAAGGAAGCCATTGAAGACTTCTGCAATGAAAACATTCCAACCACTTTAACCATGGTGGATTTGGGCTGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTTCATAAAAACCTTCACAGTAAACCACTCCAATATCAAATCTTCTTCAATGATCTACCTGCAAACGATTTCAATGCCATTTTTAGATCGTTGCCAAATTTCTTGGAAGATTTGAAGAACCAAATTGGAACTGATTTTGGAAACTGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAAAACTTTGCATTTTGTTCATTCTTCTTATACTCTCCATTGGCTCTCTCAGGTGATTCTCAAAATCTTATTCTCTAAAAAAATCCCATCAATCGAATTAATAATAACGTTTAAGTATGTATATGACCAACGAGGAACTTCCATTAGGGTTGTTATTATTGATGTACCTGAAGGGATGGAGATAATAAACAAAGGGAACATATTCATAGACTGTACAAGTCCAGAGAATGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCACTGTTTTTAAAGTGTCGTGGAGAAGAAATAGTAGGTGGTGGTCGAATGGTTCTTACCATATTAGGAAGAACAGATGAATATCCAACAAACAAAGATTTTTGTTACGCTCTTGCACTTCTCAATTTAGCTTTCAAGAACATGGTTGGAGAGGGGATTCTGAAAGAGGAGAAAGTTGATAGATTCAATATTCCAAATTTCATGCCAAGTCCAAAGGAAGTAAAAGCAGAGGTTTTAAAAGAAGGAAGTTTCATACTAAATGAACTTGGAGTCTCAAGAATTGATTGGAACTTCTACAATACCGAATTTGATGGATCAAATGTGTTAGTTGATAGCAGTTCCAATATTGCAAAATGCATTAGATCTGTTACTGAACCACTTTTGATTCCTCACTTTGGAGAAGCCATTGTTGAAGATTTATTTCAGAGGACGGTAGGTGTTAGCATACGAGCTACGACGTTCTGTAGAAAAACTGGTAAGAATTTTGAATATGTACAAGAATACAATGGAATGATTGATTTGAAAGCTTTTCTCTATCAGAGCTAG 1233 35.85 MEVSKILHMNSGVGDKSYAKNSLLQQKAISMAWPIIKEAIEDFCNENIPTTLTMVDLGCSSGPNTLMIVSKLIKQFHKNLHSKPLQYQIFFNDLPANDFNAIFRSLPNFLEDLKNQIGTDFGNCFFNGVPGSFYGRLFPNKTLHFVHSSYTLHWLSQVILKILFSKKIPSIELIITFKYVYDQRGTSIRVVIIDVPEGMEIINKGNIFIDCTSPENVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMVLTILGRTDEYPTNKDFCYALALLNLAFKNMVGEGILKEEKVDRFNIPNFMPSPKEVKAEVLKEGSFILNELGVSRIDWNFYNTEFDGSNVLVDSSSNIAKCIRSVTEPLLIPHFGEAIVEDLFQRTVGVSIRATTFCRKTGKNFEYVQEYNGMIDLKAFLYQS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33967277 33969856 - ClCG01G019790.2 Cla01g01929 265518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01929 410 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 374 IPR005299 GO:0008168
Cla01g01929 410 Gene3D Vaccinia Virus protein VP39 21 324 IPR029063 -
Cla01g01929 410 Pfam SAM dependent carboxyl methyltransferase 196 373 IPR005299 GO:0008168
Cla01g01929 410 Pfam SAM dependent carboxyl methyltransferase 39 162 IPR005299 GO:0008168
Cla01g01929 410 Gene3D - 6 373 IPR042086 -
Cla01g01929 410 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 377 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01929 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101209890 504.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01929 Cla-Chr1:33967277 Cla06g00830 Cla-Chr6:12026709 1.07E-135 dispersed
Cla01g01928 Cla-Chr1:33953245 Cla01g01929 Cla-Chr1:33967277 1.34E-11 tandem
Cla01g01929 Cla-Chr1:33967277 Cla01g01930 Cla-Chr1:33978693 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1013 . . . . . . Bma09g00087 . . . . . . . . . . . . . . . . . Cla01g01929 Cam01g2014 Cec04g1672 Cco04g1736 Clacu01g2035 Cmu01g1910 Cre04g1587 . Cone12ag0775 . . . . . . Blo05g00805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03263 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01929 Cla_Chr01 FPKM 80.384743 83.938843 107.95903 107.961014 148.952118 187.620895 158.905853 175.129684 176.673248 171.837387