Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01931 ATGGAAACTGTTGAAGTGCTTCACATGAATGGAGGAGCTGGAGATTTTAGCTATGCCAACAACTCCCTTCTTCAGTCGAAGGTGATATCGATGACTAGGCCAATTACAGATGAAGCCATAAACAACTTATATTGCTCCACTTTCCCAACTACCTTCACCATAGCTGATTTGGGATGTTCTTCCGGACCAAACACTTTGATGGCAGTTTCTCAACTAATTAAAGCAGTGGAAAATGTTCGTCAAAAGCTAAAGAAGAAACCAATTGAATATCAAGTGTTCTTAAATGACTTACCTGGAAATGACTTCAATACAATCTTCAAATCATTGCCCAATTTTGTTGGAAATTTGAAAAAGGAAATTGGAGGTGATGTTGGGCCTTGTCTTTTTACTGGGGTGCCTGCTTCTTTCTATGGAAGGCTCTTTCCTACTAAAAGTGTGCATTTTATTCATTCTTCCTATAGTCTCCATTGGTTGTCTAAGGTTCCTGAAGGTTTGGAGGAGAATAAAAGAAACATTTACATGGCTGATACAAGCCCAAAGAGTGTAGTGAAGGCCTATTACAACCAATTCCAAAACGACTTTTCATTGTTTCTCAAGTGTCGTGCAGAAGAATTGGTGGATGGTGGTTGTATGATTTTCACACTTCTGGGAAGGAGAAGCCAAAATCCAGCTAGCAAAGAGTGTTCTTACATTTGGGAGCTTTTAGCTCTAGCTCTTAACGACCTAGTCGATCAGGGAATTATAGAAGAGGAGAAATTGGAGAGTTTCCACATACCGAAATACATGCCTTCACCAACAGAAATAAAGATTGAGGTTGCAAAAGAAGGATCTTTTGTGATTGACGGCATTAGAGTTTCACATGTGGATTGGAATGTTTCCAACATTAATCAATTGAACAAAGCAACATCGGATGTAAGTTTAAAGGGCAGTGGCTACAATGTGGCAAAGTACATGAGAGCAGTGGCTGAACCAATTCTTATTACTCATTTTGGAGAAGAAATTATGAATGAATTGTTCATCAGATACAGAGAAATCCTTGGTGACCGTATGGCAAAAGAGAAAACTCAATTTGTCAATGTCACTGTTTCCCTTATTAAACCAAAGTGA 1107 38.75 METVEVLHMNGGAGDFSYANNSLLQSKVISMTRPITDEAINNLYCSTFPTTFTIADLGCSSGPNTLMAVSQLIKAVENVRQKLKKKPIEYQVFLNDLPGNDFNTIFKSLPNFVGNLKKEIGGDVGPCLFTGVPASFYGRLFPTKSVHFIHSSYSLHWLSKVPEGLEENKRNIYMADTSPKSVVKAYYNQFQNDFSLFLKCRAEELVDGGCMIFTLLGRRSQNPASKECSYIWELLALALNDLVDQGIIEEEKLESFHIPKYMPSPTEIKIEVAKEGSFVIDGIRVSHVDWNVSNINQLNKATSDVSLKGSGYNVAKYMRAVAEPILITHFGEEIMNELFIRYREILGDRMAKEKTQFVNVTVSLIKPK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33997976 34000762 + ClCG01G019810.1 Cla01g01931 265520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01931 368 Gene3D - 6 353 IPR042086 -
Cla01g01931 368 Pfam SAM dependent carboxyl methyltransferase 38 366 IPR005299 GO:0008168
Cla01g01931 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 366 IPR029063 -
Cla01g01931 368 Coils Coil 66 86 - -
Cla01g01931 368 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 366 IPR005299 GO:0008168
Cla01g01931 368 Gene3D Vaccinia Virus protein VP39 21 355 IPR029063 -
Cla01g01931 368 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01931 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206474 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01931 Cla-Chr1:33997976 Cla06g00830 Cla-Chr6:12026709 5.36E-151 dispersed
Cla06g00831 Cla-Chr6:12036893 Cla01g01931 Cla-Chr1:33997976 3.12E-21 dispersed
Cla01g01930 Cla-Chr1:33978693 Cla01g01931 Cla-Chr1:33997976 1.08E-136 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1017 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g01931 Cam01g2016 Cec04g1674 Cco04g1738 Clacu01g2037 Cmu01g1912 Cre04g1589 . . . . . . . Cme08g00868 . . . . . . . . . Cmo03g00761 . . . . . . . . . . . . . . . . . . . . . . Csa06g03265 Chy02g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01931 Cla_Chr01 FPKM 5.780177 5.988717 13.827568 16.409359 14.378322 12.062465 15.632595 0.954464 1.20436 1.141632