Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01935 ATGTTGTGTAAAGAAGGGCTTGTGTTCTTAGCTCAAAACTACTTTAACACTACAGTGGCAGGAATTCTTTCCATAACTATTTTAGTGTTGGTTTCAAAAGTTTGGTGGAGACAGAGGAGCAAGAATGTTGGAGGAATTCCTGGTTACTTGGGGTTACCTTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGTACCAAAGGGTGTTACCACTTTGTCAGGCTCCGCAGGTTGTGGCATGGAAGATGGTTCAAGACAAGGCTATTCGGAAAGATACACGTGTTTGTTCCAAGTGCAGAAGGAGCAAAAACAATATTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGAGATGCTGTTGGAGAGAAGAGTTTACTATGTGTTTCCCATGAGAATCACAGAAGGATTAGACGTCTTCTAGCAGATCCTTTCTCCATGACTTCTCTGTCTAAGTTTGTCAAAGAATTTGACGACATGCTCTCCAAAAGGCTAAAGAAACTAGAAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTTAGCATGAAGATAACATTCGATTCCATGTGCAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGACAGATTGAGAAAGACTGTACAGCCGTCTCTGATGCCATGTTATCTTTCCCATTCATGATTCCAGGAACTAGATACTACAAAGGCATCAAGGCACGAAACCGACTCATGGAAAGATTTAGAGAGATAATTTCCCGACGGCGGAGGGGAGAGGAGTTACCAGAAGACTTCCTACAGTCGATGTTGCGGAGAGATTCATATCCTTCAAATGAAAAGCTGGATGACTCAGAGATAATGGATAACCTATTGACACTGATAATTGCAGGCCAAACCACCACAGCTGCTGCTATGATGTGGAGTATCAAATTCCTGGACGAGAACAGAGAGGCCCAAGAAAGGCTACGGGAAGAACAATTGTCAATTCTAGGAAAGAAGGAACATGGAGAATTGCTTACCCTTGAAGATCTTAACAAAATGTCCTACGGTTCAAAGGTTGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAGGAGATTGCAGATTAGAAGGCACGTTTCTCCTATTTTCCACCGTAGGAAAGGAAGATGATTCCTGTAGAACTATTTCTGCTGCTAGAATAATAAAGTGTTTTGAAATAAAGGAAGGATGGCATGTGAACATCGATGCAACATGTATTCATTATGACCCAGATTTGTACAAGGACCCCATGCAATTCAACCCTTCCAGATTTGATGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGGCCCAGGACCTGTCTTGGAATTAACATGGCCAAATTAACAATGTTGGTCTTCTTGCACAGAATGACTGGAGGGTACAAGTGGACGGTTGATGATCCAGATCCTTGCCTTGAAAAGAAGGCACACATCCCTAGACTGAGAAGCGGCTGCCCCATTACTTTGAAGACCTTGTAA 1533 41.75 MLCKEGLVFLAQNYFNTTVAGILSITILVLVSKVWWRQRSKNVGGIPGYLGLPFVGETFSFLSANNSTKGCYHFVRLRRLWHGRWFKTRLFGKIHVFVPSAEGAKTIFANDFVQFNKGYVKSMGDAVGEKSLLCVSHENHRRIRRLLADPFSMTSLSKFVKEFDDMLSKRLKKLEKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCTAVSDAMLSFPFMIPGTRYYKGIKARNRLMERFREIISRRRRGEELPEDFLQSMLRRDSYPSNEKLDDSEIMDNLLTLIIAGQTTTAAAMMWSIKFLDENREAQERLREEQLSILGKKEHGELLTLEDLNKMSYGSKVVKETLRMSNVLLWFPRVALGDCRLEGTFLLFSTVGKEDDSCRTISAARIIKCFEIKEGWHVNIDATCIHYDPDLYKDPMQFNPSRFDEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYKWTVDDPDPCLEKKAHIPRLRSGCPITLKTL 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34028046 34030814 - ClCG01G019850.1 Cla01g01935 265524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01935 510 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 SUPERFAMILY Cytochrome P450 36 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 Pfam Cytochrome P450 406 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 Pfam Cytochrome P450 50 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Cla01g01935 510 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01935 510 PANTHER CYTOCHROME P450 26 18 379 - -
Cla01g01935 510 PANTHER CYTOCHROME P450 26 401 508 - -
Cla01g01935 510 PANTHER CYTOCHROME P450 FAMILY PROTEIN 18 379 - -
Cla01g01935 510 PANTHER CYTOCHROME P450 FAMILY PROTEIN 401 508 - -
Cla01g01935 510 Gene3D Cytochrome P450 36 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01935 - - - csv:101209645 894.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01935 Cla-Chr1:34028046 Cla09g00905 Cla-Chr9:9390395 4.04E-84 dispersed
Cla01g01935 Cla-Chr1:34028046 Cla08g01468 Cla-Chr8:27594042 9.18E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01935 Cla_Chr01 FPKM 2.310258 2.395828 32.379421 28.927128 1.956325 2.569361 1.796709 8.166988 8.272451 10.532375