Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01943 ATGGCCAAGCTTGTGAGCTTTGTTTTTGTTCTTTCCCTTCTTGCCTTTGCTCCACTCTGTTTCTGTGGCAGAAATAATGGTGGCTTTGGGTCTCTGTACCCTCAATATTATGACCATTCATGCCCCAAAGCTAAGGAAATAGTGAAATCCATTGTGGCAAAGGCTTTTGCCAGAGAAGCTCGTATTGCTGCTTCCATCCTTAGACTTCATTTCCATGATTGTTTTGTTCAGGGGTGTGATGCATCTCTACTGTTGGATAGCAGTGGAAGCATTAGGAGCGAAAAAAATTCAAACCCAAATAAGAACTCAGCTAGAGGATTTGAAGTGATTGATGAAATCAAATCTGCATTGGAGAAAGAGTGCCCACAAACTGTTTCTTGTGCTGATATCTTGGCTTTGGCTGCAAGAGATTCGACTGTCATTACGGGTGGACCATCTTGGGAGGTTCCATTGGGAAGGAAGGACTCAAGAACTGCGAGTTTGAGTGGCTCCAACAACAACATTCCAGCTCCAAACAATACTTTCCAAACCATTCTCAATAGATTCCAAAACCAAGGGCTTGACATTGTTGATCTTGTTGCCTTATCTGGAAGCCACACCATCGGAAATTCAAGGTGCACCAGCTTCAGGCAAAGGCTATACAACCAAAACGGCAACGGACAACCCGACAAAACCCTTCCGCAGTCGTTCGCGGCGGGGCTCCGTAACCGCTGCCCCAGATCCGGCGGTGACAATAACCTCTTTTTCCTCGACTACGTCAGCCCGACCAAATTCGACAACAGCTACTTCAAGAACTTAGTTGGTTTCAAAGGGCTTCTGAACTCCGACCAAGTTCTCCTCACCGAAAACGATGCGTCGGCCGCTTTGGTAAAGAAATATGCCGACAACAGCGAGCTGTTCTTCGAGCAATTCGCCAAATCTATGATCAAAATGGGTAATATTTCCCCATTGACGGGCTCAAATGGAGAAATTAGAAAGACTTGCAGGAAGATCAACAGTTAA 1002 45.61 MAKLVSFVFVLSLLAFAPLCFCGRNNGGFGSLYPQYYDHSCPKAKEIVKSIVAKAFAREARIAASILRLHFHDCFVQGCDASLLLDSSGSIRSEKNSNPNKNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVITGGPSWEVPLGRKDSRTASLSGSNNNIPAPNNTFQTILNRFQNQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQNGNGQPDKTLPQSFAAGLRNRCPRSGGDNNLFFLDYVSPTKFDNSYFKNLVGFKGLLNSDQVLLTENDASAALVKKYADNSELFFEQFAKSMIKMGNISPLTGSNGEIRKTCRKINS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34110056 34112700 + ClCG01G019950.1 Cla01g01943 265532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01943 333 CDD secretory_peroxidase 32 331 IPR033905 GO:0004601|GO:0042744
Cla01g01943 333 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 249 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 265 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 ProSiteProfiles Plant heme peroxidase family profile. 31 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 Gene3D - 36 332 - -
Cla01g01943 333 PANTHER PEROXIDASE 5 332 - -
Cla01g01943 333 PANTHER PEROXIDASE 72-RELATED 5 332 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Cla01g01943 333 SUPERFAMILY Heme-dependent peroxidases 32 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 Gene3D Peroxidase, domain 2 169 312 - -
Cla01g01943 333 Pfam Peroxidase 48 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cla01g01943 333 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01943 333 PRINTS Haem peroxidase superfamily signature 251 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01943 Cla07g00832 CCT
Cla01g01943 Cla07g00832 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01943 Cla-Chr1:34110056 Cla09g01169 Cla-Chr9:13907680 3.63E-105 dispersed
Cla06g00418 Cla-Chr6:5086645 Cla01g01943 Cla-Chr1:34110056 3.29E-99 dispersed
Cla07g01656 Cla-Chr7:33833439 Cla01g01943 Cla-Chr1:34110056 1.14E-89 dispersed
Cla10g01940 Cla-Chr10:35241311 Cla01g01943 Cla-Chr1:34110056 3.85E-70 dispersed
Cla01g00472 Cla-Chr1:5069003 Cla01g01943 Cla-Chr1:34110056 4.31E-95 transposed
Cla03g00023 Cla-Chr3:273791 Cla01g01943 Cla-Chr1:34110056 1.04E-103 transposed
Cla05g02360 Cla-Chr5:35184436 Cla01g01943 Cla-Chr1:34110056 1.02E-96 transposed
Cla11g00557 Cla-Chr11:6305572 Cla01g01943 Cla-Chr1:34110056 1.20E-109 transposed
Cla01g01943 Cla-Chr1:34110056 Cla07g00832 Cla-Chr7:23049341 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01943 K00430 - csv:101204648 606.29