Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01949 ATGGCAGCGGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTCTTGGAACCACCAAATTCAGAAAGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTTGAGACGGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCTTGAAAGAAGGAAGAATTGTGGATAAGGTGGTTGGAGCTAAAAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCCACTGCTTCTGCCTGA 366 46.72 MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34151580 34152923 - ClCG01G020010.1 Cla01g01949 265538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01949 121 PANTHER THIOREDOXIN H-TYPE-LIKE ISOFORM X1 5 119 - -
Cla01g01949 121 ProSiteProfiles Thioredoxin domain profile. 1 117 IPR013766 -
Cla01g01949 121 SUPERFAMILY Thioredoxin-like 7 116 IPR036249 -
Cla01g01949 121 Gene3D Glutaredoxin 1 120 - -
Cla01g01949 121 Pfam Thioredoxin 13 111 IPR013766 -
Cla01g01949 121 ProSitePatterns Thioredoxin family active site. 34 52 IPR017937 -
Cla01g01949 121 PANTHER THIOREDOXIN 5 119 - -
Cla01g01949 121 CDD TRX_family 28 111 - -
Cla01g01949 121 PRINTS Thioredoxin family signature 33 41 - -
Cla01g01949 121 PRINTS Thioredoxin family signature 41 50 - -
Cla01g01949 121 PRINTS Thioredoxin family signature 80 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01949 K03671 trxA; thioredoxin 1 - csv:101203181 204.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01949 Cla-Chr1:34151580 Cla07g00344 Cla-Chr7:4128673 3.39E-26 dispersed
Cla02g00604 Cla-Chr2:6626552 Cla01g01949 Cla-Chr1:34151580 5.35E-15 transposed
Cla03g01119 Cla-Chr3:23014754 Cla01g01949 Cla-Chr1:34151580 4.58E-18 transposed
Cla08g00654 Cla-Chr8:18791332 Cla01g01949 Cla-Chr1:34151580 9.85E-17 transposed
Cla10g01267 Cla-Chr10:27477400 Cla01g01949 Cla-Chr1:34151580 1.05E-09 transposed
Cla01g01949 Cla-Chr1:34151580 Cla05g01907 Cla-Chr5:30917341 1.32E-44 wgd
Cla01g01949 Cla-Chr1:34151580 Cla08g01455 Cla-Chr8:27447256 3.52E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01949 Cla_Chr01 FPKM 4.648936 2.850609 5.883664 6.63151 5.677127 5.051027 4.427894 11.830213 9.903089 8.327854