Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01952 ATGCGGATGGAAATTGGAAAAAGAAAGGAAGGGAGAATTGAAAGCGTGATTAACGCTGCCATCAACCATCAGCCGGCAGCCAGCAGTAGCAGAAACTGCTGCACCAGTTTGGCGCCTCCAATTCAGGCAGAGGGGTTCCACCCTCTGATTATGGATTTTAGGTTCTGGGTCAGAGCAACAATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGTACAAAATACAATCATCCCTTCTCCCTTCACTTTTATTTTTTGAGATTGCGTATGTCAAACTTCTCTTCTCTCTATAGTAAACCCCATCACCTTTTTCTGCCCCTTCTTTACTTACTGTTTTTCAGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1308 48.93 MRMEIGKRKEGRIESVINAAINHQPAASSSRNCCTSLAPPIQAEGFHPLIMDFRFWVRATMSGFFTLGGGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQQHHHHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGTKYNHPFSLHFYFLRLRMSNFSSLYSKPHHLFLPLLYLLFFRLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34179641 34181302 - ClCG01G020040.2 Cla01g01952 265541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01952 435 PANTHER PROTEIN SHI RELATED SEQUENCE 7 61 433 - -
Cla01g01952 435 MobiDBLite consensus disorder prediction 111 134 - -
Cla01g01952 435 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 174 216 IPR006510 -
Cla01g01952 435 MobiDBLite consensus disorder prediction 227 251 - -
Cla01g01952 435 MobiDBLite consensus disorder prediction 68 97 - -
Cla01g01952 435 Pfam Domain of unknown function (DUF702) 172 365 - -
Cla01g01952 435 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 317 364 IPR006511 -
Cla01g01952 435 MobiDBLite consensus disorder prediction 227 246 - -
Cla01g01952 435 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 61 433 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01952 Cla07g00839 CCT
Cla01g01952 Cla07g00839 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01952 Cla-Chr1:34179641 Cla09g01313 Cla-Chr9:20577197 4.62E-58 dispersed
Cla01g01952 Cla-Chr1:34179641 Cla05g01902 Cla-Chr5:30859567 1.91E-48 wgd
Cla01g01952 Cla-Chr1:34179641 Cla07g00839 Cla-Chr7:23199383 8.90E-49 wgd
Cla01g01952 Cla-Chr1:34179641 Cla08g01447 Cla-Chr8:27346475 1.71E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60487 PF05142 DUF702 3.50E-65 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01952 - - bhj:120072889 479.944