Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01956 ATGGACTTCTCTCTTCATTTCTTCATCCTCTTTCTATTTTCATCTTTTCATCTTCGGCCCTCTACTTCATGCCATCCCACTGACAAACAAGCACTTCTCCACTTCAAAACCAAAATCACTTCTGACCCTTCTCAGTTACTGCTTTCTTGGAATTCCGCCACCGACTGCTGCTCCTCCTGGGACGGCGTCGGCTGCGATTCCTCCGGCAGGGTCACCAACCTCACCCGCCCTGGAATTGTCTCCGGCACCGACTTCATCGCCGATACCTTCATGTCTGGATCTCTCTCCCCTTTTCTTGGAAACTTGTCGTCTCTTCAATTTCTTGATCTCAGCAATCTAAAACACATCAAGGGTCGAATTCCGTCGGAGTTTGGAAAGTTATCACGACTCACCCATTTGTTTCTCTATTCAAATCAGCTCGTGGGTCCGATTCCTACAAGTTTTCGGTGCCTTTTTCGATTGGAAAAACTCTATCTTGGCAACAATCTACTCTCTGGAATCATCCCTCCCTCAATTTTTACCCATTTCAAGTGCCTTACAGAATTGGGTCTTTCCGGAAATAAACTATCTGGATCGATTCCTAATACAATTGGGAAGCTAATTCAGGTAAAAAATCTCGATCTCCATGCCAATAATTTCTCAGGAAGCATTCCTAAGAGTATTGGTAACCTTAAAAGCCTCAGGTATCTCGATTTGTCTGAAAATGAAATAACAGGGAGCATTCCAAATTCGATTGGTGAACTCTCTGAGTTGGTTTTACTTTACCTTAATCAGAACAAGATTACCGGAAGTATTCCCTCATCAATTGCCGGACTTAGTTCTCTGATATTCTGCCGTTTGTCGGAAAACCAGCTAAGTGGTCGGTTACCGGCGTCGATCGGAAAGCTTGAAAAGATCCAAAGACTGATTCTTGAGAACAACAAGCTTACTGGAAAATTGCCTTCTTCTATCGGCCGTTTGACAACGTTAACTGACTTGTTCTTCTCTAACAATCTTTTTACCGGCAAGATCCCCAAGACTTTTGGAAATTTGGAAAACCTTCAAACTCTTGACTTGTCGAGAAATTTACTTTCTGGTGGGATTCCTCATCAGTTATCCAAATTGCAGAGATTACAGAGCTTGGATTTTTCTTTTAATCCTCTTGGGTTGCGAAGCATACCAAATTGGTTTGCAAAGATGAAACTTTTCAAGTTACTTTTAGCTAAAACTGGGATTGAAGGGCAGCTTCCAAAATGGTTGTCTTCATCCTCAATATCGGTTCTTGATTTCTCGAGTAATCGATTAACAGGGCCGCTGCCCCATTGGATTGGAAATATGACCAATCTTTCATTCCTTAACCTTTCAAACAACGGATTTCATTCATCAATCCCAGCTGAATTCAAAAACCTTTTACTGTTAATGGATCTTGATCTTCACTCCAACCACTTTACAGGGTGCCTTGACAACATATTTTCAAAAGGGGTTGAAGACCCACTTGGCCATTACAATTCCATTGATGTTTCTGGCAATCATTTCAGTGGTTGTATTGATCAGAATATTGGAAACAGAGCAGCAATGTCTTCAATCAAATCGCTTGTTTTATCAAACAATAAATTAGAAGGGCATATCCCCAAGTCGTTGTCGGAACTTAGCGAATTGCAGGTGCTGGAGCTGGCTGAAAACCGGCTTTCCGGTGAAATACCCGCGGAGATGGGAGATGCGGCGGAATTAACTACGATTTTGCTTTCGAAGAACAGGCTATGTGGAGCAATTCCAATACAGGTGTTGAATTTGCAAAAGCTTTGGAAATTCGACGTGTCGGAAAATAGACTTTGTGGAGAAATTCCACCGCATAAAGCACATTTCCCTGTCTCTGCATTCAAACATAATCGTGGACTCTGTGGAACTCCACTTCCCCCTTGCAACCATTCTTAG 1914 42.37 MDFSLHFFILFLFSSFHLRPSTSCHPTDKQALLHFKTKITSDPSQLLLSWNSATDCCSSWDGVGCDSSGRVTNLTRPGIVSGTDFIADTFMSGSLSPFLGNLSSLQFLDLSNLKHIKGRIPSEFGKLSRLTHLFLYSNQLVGPIPTSFRCLFRLEKLYLGNNLLSGIIPPSIFTHFKCLTELGLSGNKLSGSIPNTIGKLIQVKNLDLHANNFSGSIPKSIGNLKSLRYLDLSENEITGSIPNSIGELSELVLLYLNQNKITGSIPSSIAGLSSLIFCRLSENQLSGRLPASIGKLEKIQRLILENNKLTGKLPSSIGRLTTLTDLFFSNNLFTGKIPKTFGNLENLQTLDLSRNLLSGGIPHQLSKLQRLQSLDFSFNPLGLRSIPNWFAKMKLFKLLLAKTGIEGQLPKWLSSSSISVLDFSSNRLTGPLPHWIGNMTNLSFLNLSNNGFHSSIPAEFKNLLLLMDLDLHSNHFTGCLDNIFSKGVEDPLGHYNSIDVSGNHFSGCIDQNIGNRAAMSSIKSLVLSNNKLEGHIPKSLSELSELQVLELAENRLSGEIPAEMGDAAELTTILLSKNRLCGAIPIQVLNLQKLWKFDVSENRLCGEIPPHKAHFPVSAFKHNRGLCGTPLPPCNHS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34206530 34208443 + ClCG01G020070.1 Cla01g01956 265545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01956 637 SUPERFAMILY RNI-like 93 479 - -
Cla01g01956 637 PRINTS Leucine-rich repeat signature 227 240 - -
Cla01g01956 637 PRINTS Leucine-rich repeat signature 344 357 - -
Cla01g01956 637 SUPERFAMILY L domain-like 395 634 - -
Cla01g01956 637 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Cla01g01956 637 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Cla01g01956 637 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Cla01g01956 637 Pfam Leucine rich repeat 521 580 IPR001611 GO:0005515
Cla01g01956 637 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Cla01g01956 637 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cla01g01956 637 SMART LRR_sd22_2 248 274 - -
Cla01g01956 637 SMART LRR_sd22_2 320 346 - -
Cla01g01956 637 SMART LRR_sd22_2 368 388 - -
Cla01g01956 637 SMART LRR_sd22_2 519 545 - -
Cla01g01956 637 SMART LRR_sd22_2 127 146 - -
Cla01g01956 637 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 7 637 - -
Cla01g01956 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 637 - -
Cla01g01956 637 SMART LRR_typ_2 176 200 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 151 175 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 439 462 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 224 248 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 296 320 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 344 367 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 368 392 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 127 150 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 591 622 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 543 567 IPR003591 -
Cla01g01956 637 SMART LRR_typ_2 463 486 IPR003591 -
Cla01g01956 637 Gene3D Ribonuclease Inhibitor 21 79 IPR032675 -
Cla01g01956 637 Gene3D Ribonuclease Inhibitor 384 637 IPR032675 -
Cla01g01956 637 Gene3D Ribonuclease Inhibitor 85 383 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01956 - - - csv:101207198 1113.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01956 Cla-Chr1:34206530 Cla05g02493 Cla-Chr5:36306121 1.12E-138 dispersed
Cla07g00848 Cla-Chr7:23647315 Cla01g01956 Cla-Chr1:34206530 4.66E-20 dispersed
Cla01g01956 Cla-Chr1:34206530 Cla01g01761 Cla-Chr1:32517304 8.28E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01956 Cla_Chr01 FPKM 28.538172 32.685791 30.77714 27.602671 35.748199 34.374008 35.120777 33.921864 32.334045 33.102436