Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01957 ATGGAAGCTGCGTTGAAGATGGGTGTCACGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTAAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTCAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCACGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG 891 50.51 MEAALKMGVTKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLKQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34213799 34214689 + ClCG01G020080.1 Cla01g01957 265546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01957 296 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 MobiDBLite consensus disorder prediction 148 179 - -
Cla01g01957 296 MobiDBLite consensus disorder prediction 47 100 - -
Cla01g01957 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 274 - -
Cla01g01957 296 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 187 287 - -
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 22 186 - -
Cla01g01957 296 MobiDBLite consensus disorder prediction 68 100 - -
Cla01g01957 296 Coils Coil 44 67 - -
Cla01g01957 296 SMART GATA_3 212 266 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 CDD ZnF_GATA 217 265 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 PIRSF Txn_fac_GATA_plant 11 293 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cla01g01957 296 MobiDBLite consensus disorder prediction 191 219 - -
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 187 287 - -
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 22 186 - -
Cla01g01957 296 Gene3D - 209 289 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01957 Cla-Chr1:34213799 Cla11g00369 Cla-Chr11:4144125 1.80E-45 dispersed
Cla01g01957 Cla-Chr1:34213799 Cla07g00847 Cla-Chr7:23574734 1.17E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60488 PF00320 GATA 1.20E-16 CL0167 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01957 - K21630 bhj:120072849 481.1