Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01957 ATGGAAGCTGCGTTGAAGATGGGTGTCACGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTAAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTCAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCACGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG 891 50.51 MEAALKMGVTKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLKQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34213799 34214689 + ClCG01G020080.1 Cla01g01957 265546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01957 296 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 MobiDBLite consensus disorder prediction 148 179 - -
Cla01g01957 296 MobiDBLite consensus disorder prediction 47 100 - -
Cla01g01957 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 274 - -
Cla01g01957 296 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 187 287 - -
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 22 186 - -
Cla01g01957 296 MobiDBLite consensus disorder prediction 68 100 - -
Cla01g01957 296 Coils Coil 44 67 - -
Cla01g01957 296 SMART GATA_3 212 266 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 CDD ZnF_GATA 217 265 IPR000679 GO:0006355|GO:0043565
Cla01g01957 296 PIRSF Txn_fac_GATA_plant 11 293 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cla01g01957 296 MobiDBLite consensus disorder prediction 191 219 - -
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 187 287 - -
Cla01g01957 296 PANTHER GATA TRANSCRIPTION FACTOR 22 186 - -
Cla01g01957 296 Gene3D - 209 289 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01957 - - K21630 bhj:120072849 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01957 Cla-Chr1:34213799 Cla11g00369 Cla-Chr11:4144125 1.80E-45 dispersed
Cla01g01957 Cla-Chr1:34213799 Cla07g00847 Cla-Chr7:23574734 1.17E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01209 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.9e-69 257.7
Cla11g01481 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.3e-67 251.1
Cla01g01957 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.7e-42 167.5
Cla09g01216 . 291 807 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60488 PF00320 GATA 1.20E-16 CL0167 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01957 Cla_Chr01 FPKM 22.846054 25.361031 55.455448 55.486561 14.35605 13.661975 15.61494 41.121769 41.673046 48.7146