Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01960 ATGGATTCTCAATCTCTTCTTCAACCTCTCAATATGGCATTCTTTTTCACACTCCCTCTTCTGTTTCTGCTGGGACCGCTGTTCCGATGTTTCCGGCGAAAGTTGCCGTTTCCACCCGGCCCAAAAGGCCTCCCCTTCATCGGCAATATGCTGATGATGGACCAGCTCACCCACCGTGGACTCGCCAATCTCGCCACCCGCTACGGCGGAATTTTCCATATGCGCATGGGCTTCCTTCATATGGTCACTGTCTCCAACCCCGACATCGCCCGCCAAGTTCTTCAGGTTCAAATCACTGTCCATGATGGTATTTGTTCTAATCGTCCGGCCACCATTGCCATAACATACTTAACGTACAACCGTGCCGACATGGCTTTCGCTCATTATGGCCCATTCTGGCGGCAGATGCGTAAGCTCTGCGTCATGAAATTATTCAGTCGGAAGCGAGTTGAGTCATGGCAGTCTATTCGTGATGAGGTGGACACCACCATTAAAAAGGTCGCCGTTCAGACGGGAACCACCGTGAACATCGGGGAGCTAGTGTTTGAACTAACAAGAGATATTATTTATAGAGCTGCGTTTGGGTCAAGCGCAATGCAAGGTCAGGACGAGTTTATAAGTATCTTACAAGAATTCTCTAAACTTTTTGGAGCTTTCAATATTGCCGATTTTATTCCGAGTCTGGGTTGGATTGACCCTCAAGGCTTGAACAACAGACTCGTTAAGGCTCGTCAATCACTCGATAAATTCATTGACTCTATAATCGACAATCACATAAGTAAAAAAAGGAAGGAAGCAAAGTTACCAAATTATGACCATGAAATTGACAGTGATATGGTGGATGAATTGCTGGCTTTTTACAATGAAGATTCAACCATAATAAATGCATCAAATGATCTACAAAACAACATCAAACTCAGTCGTGACAACATCAAAGCCATCATCATGGATGTTATGTTTGGTGGGACGGAGACGGTAGCGTCGGCGATAGAGTGGGCCATGTCGGAGCTAATGAGAAGCCCAGAAGATTTAAAGAAAGCCCAACAAGAACTCGACGAAGTCGTCGGTCTCGAACGACGTGTCGAAGAAACCGACTTCGAAAATTTGACCTTTTTGAGATGCTGCCTCAAGGAGACTCTTCGGCTGCACCCACCAATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCCGTGGTCGCCGGCTACTTCATTCCGGCGAAATCTCGAGTCATGGTGAACGCGTGGGCCATTGGGAGGGATCCGGCGTCGTGGGACGACCCCGAAACATTCCGGCCGGCGAGGTTTCTAGAACAGGGGGTCCCGGATTTTAAAGGGAACAACTTCGAGTTCATTCCGTTCGGGTCTGGTCGGCGGTCTTGCCCCGGAATGCAACTGGGTTTGTATGGGCTTGAAATGGCGGTGGCCCACTTGTTGCACTGTTTCAATTGGGAATTGCCCGACGGGATGAGGCCGAGCGAAATGGACATGAGCGATATTTTCGGACTGACCGCTCCGAGAGCGACCCGGCTTGTGGCTGTGCCCACGAAACGGGTTCTATGTCCACTCCTGTGA 1572 49.68 MDSQSLLQPLNMAFFFTLPLLFLLGPLFRCFRRKLPFPPGPKGLPFIGNMLMMDQLTHRGLANLATRYGGIFHMRMGFLHMVTVSNPDIARQVLQVQITVHDGICSNRPATIAITYLTYNRADMAFAHYGPFWRQMRKLCVMKLFSRKRVESWQSIRDEVDTTIKKVAVQTGTTVNIGELVFELTRDIIYRAAFGSSAMQGQDEFISILQEFSKLFGAFNIADFIPSLGWIDPQGLNNRLVKARQSLDKFIDSIIDNHISKKRKEAKLPNYDHEIDSDMVDELLAFYNEDSTIINASNDLQNNIKLSRDNIKAIIMDVMFGGTETVASAIEWAMSELMRSPEDLKKAQQELDEVVGLERRVEETDFENLTFLRCCLKETLRLHPPIPLLLHETAEDAVVAGYFIPAKSRVMVNAWAIGRDPASWDDPETFRPARFLEQGVPDFKGNNFEFIPFGSGRRSCPGMQLGLYGLEMAVAHLLHCFNWELPDGMRPSEMDMSDIFGLTAPRATRLVAVPTKRVLCPLL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34243021 34246746 + ClCG01G020110.2 Cla01g01960 265549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01960 523 Pfam Cytochrome P450 38 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PANTHER CYTOCHROME P450 84A1-RELATED 10 522 - -
Cla01g01960 523 Gene3D Cytochrome P450 29 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 10 522 - -
Cla01g01960 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Cla01g01960 523 SUPERFAMILY Cytochrome P450 28 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 Coils Coil 344 364 - -
Cla01g01960 523 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g01960 523 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01960 Cla-Chr1:34243021 Cla01g01872 Cla-Chr1:33534605 2.06E-127 dispersed
Cla02g00489 Cla-Chr2:4807358 Cla01g01960 Cla-Chr1:34243021 0 transposed
Cla03g01432 Cla-Chr3:29908591 Cla01g01960 Cla-Chr1:34243021 1.08E-74 transposed
Cla04g01145 Cla-Chr4:26653420 Cla01g01960 Cla-Chr1:34243021 3.73E-80 transposed
Cla06g01546 Cla-Chr6:29033908 Cla01g01960 Cla-Chr1:34243021 1.98E-109 transposed
Cla10g01561 Cla-Chr10:31014768 Cla01g01960 Cla-Chr1:34243021 8.31E-97 transposed
Cla11g00024 Cla-Chr11:336077 Cla01g01960 Cla-Chr1:34243021 3.82E-106 transposed
Cla01g01960 Cla-Chr1:34243021 Cla07g00844 Cla-Chr7:23484197 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01960 K09755 - csv:101205783 879.011