Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01962 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGATGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTAGAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTGGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCACGAAGAGTTGAGGGTTTCAGTTGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTGAACATGTAA 510 40.98 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLENDVKDLNAKPMEQVEKVRSQNEERGEIEKHEELRVSVVKKDYSNGDGHSKRPNKVIDLNM 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34257220 34258628 - ClCG01G020130.1 Cla01g01962 265551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01962 169 CDD Bbox1_BBX-like 4 47 - -
Cla01g01962 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cla01g01962 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cla01g01962 169 MobiDBLite consensus disorder prediction 148 169 - -
Cla01g01962 169 Gene3D Classic Zinc Finger 1 95 - -
Cla01g01962 169 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cla01g01962 169 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla01g01962 169 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Cla01g01962 169 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Cla01g01962 169 MobiDBLite consensus disorder prediction 148 162 - -
Cla01g01962 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla01g01962 169 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01962 Cla-Chr1:34257220 Cla07g00964 Cla-Chr7:25824123 5.21E-25 dispersed
Cla11g01201 Cla-Chr11:25191166 Cla01g01962 Cla-Chr1:34257220 1.64E-07 dispersed
Cla07g00792 Cla-Chr7:22217315 Cla01g01962 Cla-Chr1:34257220 2.04E-09 transposed
Cla01g01962 Cla-Chr1:34257220 Cla08g01445 Cla-Chr8:27322483 5.61E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60490 PF00643 zf-B_box 2.80E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01962 - - csv:101206016 327.02