Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01962 | ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGATGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTAGAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTGGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCACGAAGAGTTGAGGGTTTCAGTTGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTGAACATGTAA | 510 | 40.98 | MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLENDVKDLNAKPMEQVEKVRSQNEERGEIEKHEELRVSVVKKDYSNGDGHSKRPNKVIDLNM | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34257220 | 34258628 | - | ClCG01G020130.1 | Cla01g01962 | 265551 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01962 | 169 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
Cla01g01962 | 169 | Pfam | B-box zinc finger | 4 | 42 | IPR000315 | GO:0008270 | |
Cla01g01962 | 169 | Pfam | B-box zinc finger | 52 | 85 | IPR000315 | GO:0008270 | |
Cla01g01962 | 169 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
Cla01g01962 | 169 | Gene3D | Classic Zinc Finger | 1 | 95 | - | - | |
Cla01g01962 | 169 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270 | |
Cla01g01962 | 169 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cla01g01962 | 169 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 169 | - | - | |
Cla01g01962 | 169 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 97 | IPR000315 | GO:0008270 | |
Cla01g01962 | 169 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
Cla01g01962 | 169 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cla01g01962 | 169 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 169 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01962 | Cla-Chr1:34257220 | Cla07g00964 | Cla-Chr7:25824123 | 5.21E-25 | dispersed | |
Cla11g01201 | Cla-Chr11:25191166 | Cla01g01962 | Cla-Chr1:34257220 | 1.64E-07 | dispersed | |
Cla07g00792 | Cla-Chr7:22217315 | Cla01g01962 | Cla-Chr1:34257220 | 2.04E-09 | transposed | |
Cla01g01962 | Cla-Chr1:34257220 | Cla08g01445 | Cla-Chr8:27322483 | 5.61E-23 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60490 | PF00643 | zf-B_box | 2.80E-06 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01962 | - | - | csv:101206016 | 327.02 |