Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01963 ATGAAGCCTCTTCTGTTGCTTTTTGCTCTGCTCTGCGGCGGTTTCTTTTCCTCTTCCGCCGACACCAGCGCCCAAACCCTACTGGAGATTCAGGCATTGATGTCCTTTAAACTTAATCTTCATGATCCTCTTGGTGCATTGACTGCTTGGGATTCTTCCACCCCATTGGCGCCATGTGACTGGCGGGGTGTTCTTTGTACTAATAATCGAGTTACTGAGCTCCGTTTGCCTCGCCTTCAACTCTCCGGCCGATTGACCGATCAGTTGGCTAATTTGCGGATGCTGCGGAAGTTCAGTATCCGCTCTAATTTCTTCAATGGTACGATTCCCTCTTCTTTGTCCAAATGTGCGTTGCTGCGTTCTGTTTTCTTGCAGTACAATTTGTTTTCTGGTGGCCTTCCGGCGGAGTTTGGCAACTTGACTAATCTACATGTACTAAACGTGGCGGAGAATCGCCTCTCCGGTGTGATCTCCAGCGACCTTCCGGGTAGTCTGAAATATCTCGATCTCTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGTATTGTGAACATGACGAACCTTCAGGTCGTTAATCTCTCTTTCAATAGGTTCGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTCAACATCTCTGGCTCGACCATAATGTGTTGGAAGGGACGTTGCCGTCGGCTCTCGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCGCTTCAAGGCGTAATCCCGGCCGCCATTGGAGCTCTTCCGAATCTTCAAGTCATTTCCCTCTCGCAGAATGGTCTCTCTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTTTCGTCGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGACAGCGACGTGTTTTAGTGCTTTACAGGTCCTCGATATCCAACACAATCAGATAAGGGGAGAGTTCCCCTTGTGGTTAACGGGCGTTTCTACTCTGACGGTCTTGGATTTTTCTATCAATCATTTCTCCGGCCAGATTCCGCCTGGGATTGGGAATCTTTCAGGATTACAAGAGCTCAGAATGTCGAATAATTCGTTTCAGGGCGCGATTCCTTTAGAAATCAAGAACTGCGCCTCGATTTCGGTTATTGATTTTGAAGGGAATCGCTTAACCGGGGAGATTCCGTCGTTTTTGGGTTATATGAGAGGTTTGAAACGGTTGTCTCTCGGTGGAAATAGTTTTTCCGGCACTGTTCCGGTCAGTTTGGGAAATCTTTTGCAGCTTGAAATCTTGAATTTAGAGGACAATGGCTTGAACGGAACCCTTCCGCTGGAGCTAATGGGTCTTGGGAATTTAATAGTAATGGAACTCGGTGGGAATGAACTTTCCGGTGAGGTTCCGATTGGTATTGGCAACCTCAGTCGTCTTGAGATTTTGAATCTCAGTGCTAACAGTCTTTCTGGGACGATTCCGTCTAGTCTTGGCAATCTCTTCAAGCTAACCACTCTGGACTTGAGCAAACAAAATCTTTCTGGGGAGTTGCCATTTGAGCTCTCTGGTTTGCCTAATTTGCAGGTAATTGCTCTACAGGAAAACAAGCTATCTGGGAGTGTTCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCGCTATATGAATCTAAGTTCAAACGGATTTTCCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCGCTTGTATCTCTGTCATTATCAGACAATCACATTTCGGGGTCAATCCCTTCAGAGCTTGGTAACTGCTCTGATCTAGGAAGGTTGGAGGTCCGTTCAAATGCTCTTTCAGGCCAGATTCCGGCGGATCTTTCTCGTTTATCTCATCTACAAGAGCTGGATTTGGGTAGGAATAATTTAACCGGCGAAATCCCAGAAGAGCTCTCAAGTTGTTCGTCTTTAGAATCGCTCCGTCTGAACTCGAATCATCTTTCCGGTCCCATACCGGAGTCATTGTCAGAACTCTTAAACTTAACCACACTGGACCTCTCATCCAACAATTTGAGTGGTGTTATCCCTGCTAATCTTAGCTCCATTACTGGATTGGTGAGCTTAAACGTCTCAAATAATAATCTAGAAGGCGAAATTCCATCCTCTTTAGGCTCAAGATTCAACAGCTCATCTGTGTTTGCTAATAACTCTAATTTATGTGGGAAACCACTGGCTCAGAATTGTAAGGATACAGAGAAAAAGGATAAAATGAAGAGATTGATTCTATTCATTGCAGTGGCTGCTAGTGGAGCTTGCCTCTTGACTTTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGGAAGAGGCTCAAAGAGAGGGCATCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCAGCAAGTGGTGGCCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCGGAAACAATCGAGGCGACAAGACAATTCGATGAAGAGAATGTTCTAAGCAGAACCCGTTATGGGTTGGTTTTCAAAGCTTGTTACAATGATGGCATGGTCCTCTCAATCCGCCGCCTCTCAAATGGTTCATTAGATGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTAGGCACCGCAATCTAACTGTTCTTCGTGGCTATTATGCTGGCCCTCCTGATATGCGGCTGTTAGTATACGATTACATGCCTAATGGGAACCTTGCCACTCTCCTTCAGGAAGCATCTCATCAAGATGGTCATGTTCTAAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATCGCCCGTGGCTTAGCCTTTCTCCATTCATCTTCCATTATCCATGGAGATGTGAAGCCACAAAGTGTTCTCTTCGACGCAGATTTCGAAGCTCATTTGTCGGATTTCGGCCTAGACCGACTAACCGTTGCAGCCTCAGCCGAAGCATCCACGTCTACTTTGGTGGGCACATTAGGCTACATTGCCCCTGAAGCAGTGTTGACAGGGGAAGCCACAAAGGAATCTGATGTCTACAGCTTTGGCATTGTGTTGCTCGAGATTCTAACAGGGAAGAAACCAGTAATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTCTTAGAACCAGGTTTACTTGAGCTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGATTGCTTTGCACTGCACCGGATCCTCGTGATCGGCCGACTATGTCCGATATCGTTTTCATGCTCGAAGGTTGCCGTGTCGGACCAGACATCCCTTCCTCGGCAGATCCCACCTCCCAACCGTCTCCAGCATAA 3396 46.58 MKPLLLLFALLCGGFFSSSADTSAQTLLEIQALMSFKLNLHDPLGALTAWDSSTPLAPCDWRGVLCTNNRVTELRLPRLQLSGRLTDQLANLRMLRKFSIRSNFFNGTIPSSLSKCALLRSVFLQYNLFSGGLPAEFGNLTNLHVLNVAENRLSGVISSDLPGSLKYLDLSSNAFSGQIPRSIVNMTNLQVVNLSFNRFGGEIPASFGELQELQHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALPNLQVISLSQNGLSGSVPYSMFCNVSSHAPSLRIVQLGFNAFTDIVKPQTATCFSALQVLDIQHNQIRGEFPLWLTGVSTLTVLDFSINHFSGQIPPGIGNLSGLQELRMSNNSFQGAIPLEIKNCASISVIDFEGNRLTGEIPSFLGYMRGLKRLSLGGNSFSGTVPVSLGNLLQLEILNLEDNGLNGTLPLELMGLGNLIVMELGGNELSGEVPIGIGNLSRLEILNLSANSLSGTIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGSVPEGFSSLVGLRYMNLSSNGFSGQIPSNYGFLRSLVSLSLSDNHISGSIPSELGNCSDLGRLEVRSNALSGQIPADLSRLSHLQELDLGRNNLTGEIPEELSSCSSLESLRLNSNHLSGPIPESLSELLNLTTLDLSSNNLSGVIPANLSSITGLVSLNVSNNNLEGEIPSSLGSRFNSSSVFANNSNLCGKPLAQNCKDTEKKDKMKRLILFIAVAASGACLLTLCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTVAASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34272640 34276035 + ClCG01G020140.1 Cla01g01963 265552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01963 1131 Gene3D Ribonuclease Inhibitor 28 162 IPR032675 -
Cla01g01963 1131 SUPERFAMILY L domain-like 458 738 - -
Cla01g01963 1131 Gene3D Ribonuclease Inhibitor 163 249 IPR032675 -
Cla01g01963 1131 Gene3D Ribonuclease Inhibitor 250 353 IPR032675 -
Cla01g01963 1131 MobiDBLite consensus disorder prediction 791 818 - -
Cla01g01963 1131 SUPERFAMILY L domain-like 81 473 - -
Cla01g01963 1131 SUPERFAMILY Protein kinase-like (PK-like) 817 1119 IPR011009 -
Cla01g01963 1131 SMART LRR_typ_2 480 504 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 140 163 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 360 384 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 696 720 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 210 233 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 528 551 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 624 648 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 258 282 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 672 695 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 576 600 IPR003591 -
Cla01g01963 1131 SMART LRR_typ_2 186 209 IPR003591 -
Cla01g01963 1131 Gene3D Ribonuclease Inhibitor 458 751 IPR032675 -
Cla01g01963 1131 Pfam Leucine Rich repeat 625 640 IPR001611 GO:0005515
Cla01g01963 1131 ProSiteProfiles Protein kinase domain profile. 838 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01963 1131 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1127 - -
Cla01g01963 1131 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cla01g01963 1131 MobiDBLite consensus disorder prediction 796 810 - -
Cla01g01963 1131 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1127 - -
Cla01g01963 1131 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515
Cla01g01963 1131 Gene3D Phosphorylase Kinase; domain 1 811 913 - -
Cla01g01963 1131 Pfam Leucine rich repeat 187 247 IPR001611 GO:0005515
Cla01g01963 1131 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Cla01g01963 1131 Pfam Leucine rich repeat 650 709 IPR001611 GO:0005515
Cla01g01963 1131 Pfam Protein kinase domain 848 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01963 1131 Gene3D Ribonuclease Inhibitor 354 454 IPR032675 -
Cla01g01963 1131 Gene3D Transferase(Phosphotransferase) domain 1 914 1117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01963 Cla-Chr1:34272640 Cla06g00723 Cla-Chr6:9277151 2.68E-168 dispersed
Cla11g00542 Cla-Chr11:6152622 Cla01g01963 Cla-Chr1:34272640 3.93E-132 dispersed
Cla01g00665 Cla-Chr1:7877610 Cla01g01963 Cla-Chr1:34272640 8.50E-157 transposed
Cla02g00719 Cla-Chr2:8544316 Cla01g01963 Cla-Chr1:34272640 4.70E-67 transposed
Cla03g00639 Cla-Chr3:7634580 Cla01g01963 Cla-Chr1:34272640 1.28E-30 transposed
Cla03g01042 Cla-Chr3:20026988 Cla01g01963 Cla-Chr1:34272640 1.06E-25 transposed
Cla03g01399 Cla-Chr3:29498870 Cla01g01963 Cla-Chr1:34272640 8.87E-87 transposed
Cla05g01002 Cla-Chr5:10080430 Cla01g01963 Cla-Chr1:34272640 6.73E-136 transposed
Cla01g01963 Cla-Chr1:34272640 Cla07g00848 Cla-Chr7:23647315 2.26E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80284 PF00069 Pkinase 4.50E-35 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01963 - - csv:101203208 2029.6