Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01967 ATGGCTCTTTTGCAGAATACAATCTGCCTTCGCATTTCCACAATCATCTTCTTCCTCATCTTTCTGCTGTTTGGGAAATCTTATTGTATCAGAATTCCGAATCGAATCGCGGAACCTATCAAGATTCCGTCAACCCATCAGTCCTTGAAAACTGCAGTTTTCGCTCTGGGAAGTTTCTGGAGATCAGAAGCCGTCTTCGGTTGCTTGGATGGAGTTGTCCGGACCACCGTCGGCTACGCCGGTGGTACGAAACAGAATCCCGAGTATCGTAGCTTGGGGGATCACGCCGAGTCTGTACGGGTCCGGGCTCTTACCTTCTCTTCTCCTTTTCATTTTTTATTGCTTAATTTTCACTTTTCACTTTGTGAATTTTCTGTATTCTACATTTCGGATGTTGTGGATGTCATTATTTCGGTTGAATATGATCCTAAGCTTATTAGTTTTAGGCAACTCTTAGAGGTCTTTTGGTCCAATCATGATTCTAGGCAAGTGTTTGGGCAAGGTCCTGATGTGGGCAACCAGTATAGATCTATCATTTTTACCAATGACACTGAAGAATCTAGACTGGCTACTGTCAGCAAAGAAAAAGAGCAACTGAAGTCAAGAGGAAGTGCTGTAACTACTCAAATTCAGGAACTTGGAGCATTTTATCCTGCTGAGGCTGAACATCAGAAATTTGAGCTGAAGAGGAATCCCTTTTTTCTTCAATTAATGGGAAACTTGCCAGAAGAGGAGCTTGAGATGTCCACGTTGGCAGCAAATATGAATGGATACGCCGCAGACCTCTGTCCTTCAAAGACTCGGAAGCAAATTGATGCCAAGATCAACGACATTATCAAAAAAGGATGGCCCATTCTGAGAGAAAAATAA 870 42.87 MALLQNTICLRISTIIFFLIFLLFGKSYCIRIPNRIAEPIKIPSTHQSLKTAVFALGSFWRSEAVFGCLDGVVRTTVGYAGGTKQNPEYRSLGDHAESVRVRALTFSSPFHFLLLNFHFSLCEFSVFYISDVVDVIISVEYDPKLISFRQLLEVFWSNHDSRQVFGQGPDVGNQYRSIIFTNDTEESRLATVSKEKEQLKSRGSAVTTQIQELGAFYPAEAEHQKFELKRNPFFLQLMGNLPEEELEMSTLAANMNGYAADLCPSKTRKQIDAKINDIIKKGWPILREK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34319101 34321421 - ClCG01G020180.2 Cla01g01967 265556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01967 289 SUPERFAMILY Peptide methionine sulfoxide reductase 137 233 IPR036509 GO:0008113
Cla01g01967 289 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 49 241 IPR002569 GO:0008113
Cla01g01967 289 Pfam Peptide methionine sulfoxide reductase 137 229 IPR002569 GO:0008113
Cla01g01967 289 Pfam Peptide methionine sulfoxide reductase 51 101 IPR002569 GO:0008113
Cla01g01967 289 Coils Coil 182 202 - -
Cla01g01967 289 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE A5 13 288 - -
Cla01g01967 289 SUPERFAMILY Peptide methionine sulfoxide reductase 32 102 IPR036509 GO:0008113
Cla01g01967 289 Gene3D Peptide methionine sulphoxide reductase MsrA 126 283 IPR036509 GO:0008113
Cla01g01967 289 Gene3D Peptide methionine sulphoxide reductase MsrA 44 107 IPR036509 GO:0008113
Cla01g01967 289 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 13 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01967 K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] - csv:101204515 441.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01967 Cla-Chr1:34319101 Cla07g01635 Cla-Chr7:33662001 1.03E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1097 Blo04g00889 . . . Bpe15g00468 . . . . . Cma03g00696 Cma07g00437 Car03g00640 Car07g00385 Sed10g0984 Cpe19g00849 Cpe10g00654 Bhi03g00880 Tan03g2058 Cmetu04g1220 . Hepe04g1580 . . Cla01g01967 Cam01g2059 Cec04g1717 Cco04g1783 Clacu01g2080 Cmu01g1957 Cre04g1631 . . Cone6ag1677 Cone9ag1598 Lsi01g00615 . . Cme08g00914 . . . . . . Bma03g00965 . . Cmo03g00722 Cmo07g00435 . . . . . . . . . . . . . . . . . . . . . Csa06g03312 Chy02g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010322 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01967 Cla_Chr01 FPKM 28.366167 27.944202 32.994686 34.437325 43.77092 41.693733 42.354427 10.534322 9.99346 10.79181