Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01969 ATGTCCGCTAGAAAACAAGGTGAAACGCCGGCCGACGAAGGTGGATCTGGTACGAAGCCACCGCGCATCAAAATCTCAAAATCCTCTGAAGGAAGCGATGCCAAGAATGCTAGCAGGAAGCTTAAAGATATGGAAATCTGTGTCCCGATAGTATGTGGAACCATCGCATTTTACCTTGGCAGGAAGGCCAGCGAGTCACAGTCACATAAATGGACAGTCTATGTGCGTGGTGCTACTAATGAAGATCTCGGGGTGGTGATAAAGAGAGTCGTGTTTCAGTTGCACCCTAGCTTTAATAACCCAACAAGAGTTGTTGAATCGCCGCCTTTTGAGTTATCAGAATGTGGTTGGGGAGAATTTGAGATTGCCATCACACTTTTTTTCCACAGCGACGTCTGTGATAAACAATTAGATCTGTTTCACCATCTGAAGTTGTACCCTGAAGATGAGTCTGGTCCACAAACAACAAAGAAACCTGTTGTGGTGGAATCTTACAACGAAATTGTGTTTCCGGATCCGTCCGAAAATTTTTTCTCTCGTGTTCAGAATCATCCGGCTGTTGTTGTGCCTAGGCTTCCTGCTGGTTTCAATCTACCTAATCCTGTATCAATTGAAAATATGGCAGAAAGGGAGAGAGGCGACACCAAGGATCATCCCCTTAGCCAATGGTTCCTGAATTTCTCAGAGGCAGACGAGCTGTTAAAACTTGCAGCTGCTCGCCAACAAGTTTACCTGCCAGTTCTCCTGGTTCAGGTCAATGTAAACAACGATGTATTGAGATTGTGCAGACAGCTGTTTTCTATGGATAATGCCTATCTATTCTCAAGCTCCCATTTGTATGGCCCACAACGAATTGAAAAGCCTGCTTTTATGAAATTGCCGAATGCAGGCAGTTTGGAGCTCTACTCATTTACCCTAATAATTCTCAATGGGGGTGAGAATGGGAAACGATTAGAAGCGTTTGGATTGCCACATGGGTGGTCTTTTGATGTGGAGACATTCAAGGGAACTGGCTGGGAGCATGATGACATAGTCTGTACTCAATATGTGTATGCTTCCATCGCTCAGCATTATTTACTATCAACATTTATAGATGTTTCATTTCACATACAGGCTAATCTACTTCAGCCTTCAGCCTCCTTTAAACATATTCTCAAAAGATGTTCAAGCTTTGGCAAGAGATCAAATGGCTGCAATGAAGATGGTCTCCCCGACGACGTCCCAAAAGGCCATTTCGCAGTCTACGTCGGAGAAAACCGAAGCCGATACATTGTTCCGATATCGTGGCTGGCTCATCCGCAGTTCCAAAGCCTGCTGCAGAGAGCAGAGGAGGAGTTTGGTTTCAACCATGACATGGGAATCACTATCCCTTGTGAAGAAGTTGTTTTTCGCTCCTTAACTGCTATGATTAAGATCAGATGA 1422 44.59 MSARKQGETPADEGGSGTKPPRIKISKSSEGSDAKNASRKLKDMEICVPIVCGTIAFYLGRKASESQSHKWTVYVRGATNEDLGVVIKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAITLFFHSDVCDKQLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSENFFSRVQNHPAVVVPRLPAGFNLPNPVSIENMAERERGDTKDHPLSQWFLNFSEADELLKLAAARQQVYLPVLLVQVNVNNDVLRLCRQLFSMDNAYLFSSSHLYGPQRIEKPAFMKLPNAGSLELYSFTLIILNGGENGKRLEAFGLPHGWSFDVETFKGTGWEHDDIVCTQYVYASIAQHYLLSTFIDVSFHIQANLLQPSASFKHILKRCSSFGKRSNGCNEDGLPDDVPKGHFAVYVGENRSRYIVPISWLAHPQFQSLLQRAEEEFGFNHDMGITIPCEEVVFRSLTAMIKIR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34329877 34336067 - ClCG01G020200.2 Cla01g01969 265558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01969 473 CDD YEATS_TFIID14_like 46 177 - -
Cla01g01969 473 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14B 16 246 - -
Cla01g01969 473 Gene3D YEATS domain 41 193 IPR038704 -
Cla01g01969 473 ProSiteProfiles YEATS domain profile. 40 184 IPR005033 GO:0006355
Cla01g01969 473 Pfam YEATS family 67 147 IPR005033 GO:0006355
Cla01g01969 473 MobiDBLite consensus disorder prediction 1 37 - -
Cla01g01969 473 Pfam Auxin responsive protein 393 470 IPR003676 GO:0009733
Cla01g01969 473 PANTHER YEATS DOMAIN 16 246 IPR005033 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01969 K11341 YEATS4, GAS41, YAF9; YEATS domain-containing protein 4 - csv:101203782 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01969 Cla-Chr1:34329877 Cla02g00470 Cla-Chr2:4539235 2.16E-39 dispersed
Cla08g00774 Cla-Chr8:20130254 Cla01g01969 Cla-Chr1:34329877 2.26E-17 dispersed
Cla11g00003 Cla-Chr11:46472 Cla01g01969 Cla-Chr1:34329877 1.28E-17 dispersed
Cla01g01969 Cla-Chr1:34329877 Cla05g01886 Cla-Chr5:30693997 1.97E-35 wgd
Cla01g01969 Cla-Chr1:34329877 Cla08g01435 Cla-Chr8:27198292 4.89E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1100 . . . . . . . . . . Cma03g00693 Cma07g00434 Car03g00638 Car07g00382 Sed14g1179 Cpe19g00852 Cpe10g00656 Bhi03g00877 Tan03g2062 Cmetu04g0248 . Hepe04g1583 . . Cla01g01969 Cam01g2062 Cec04g1720 Cco04g1787 Clacu01g2083 Cmu01g1960 Cre04g1634 Cone8ag0844 Cone12ag0722 . . Lsi01g00611 . . Cme08g00917 Blo05g00827 . . . . Bpe06g00024 . . . Cmo03g00719 Cmo07g00433 . . . . . . . . . . . . . . . . . . . . . Csa06g03315 Chy02g00583 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007957 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01969 Cla_Chr01 FPKM 3.107211 3.355289 1.813679 1.212516 5.538808 6.242198 5.15018 0.315281 0.308505 0.488262