Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01972 ATGGATGGAGGGAAGGAGGGGATAGAAGGAAAAGTAGCGTCGCAACTAGCAATGGGCGAAGGTAAAGAAGGCGATTGGGAGTGCAGTGGATGCAAGAACAGGAACTATGCTTTCCGATCCTTCTGTAACAGATGCAAACAACCTCGCCTTCTCGTCGACAATAAAACGCCTCCAGACTCTAAATGGCTTCCTCGCATCGGTGACTGGATCTGCACGGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGTGGACAACCAAAGGAGGTAGCAGCAATGCCAGCAATTGCAATCCCTGGGGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCCAAGGAGGATTGGATTCAAAGATAAATCTTGGATTAATAGGAAATGGCACTTCACAGCATCTACATCCCCTGAGCTCTAACTGGTCCTTGGGAGGTGCTGATAAGTATGGAATTCATGCAGCTCCAACATTTCCTTTGGGTGGAAATAATTCTGCAATCTCGTATATGAGTTTGGCTAATCAGCTCCTTTCAGTTCCAAAGGGCTGGCGGAATGGTGACTGGTTATGCAACTGTGGTTTCCATAATTACTCTTCACGTGCACAGTGCAAGAAGTGCAATGCTTCACCACAAGCACTTGGAATGAAGCGATTAGCATCTGAAGAACTTGTTCATCACTGGGATAACAAGAGATTGAATATTGGACCGGCAAATGAGCAACAACAATCTTACCCAGGTTTTGAGCAGATGATGGGCTCCAGTAGTGACCCAAACGTGGGATTATATAATTCTTATCCCCATGAAAGTTCTAATGTAGCTCCAAATTTGGAAATGCCAATGCATTTTCCCCCACAAGCAACTGCACCAACGCTCCTAGGGAAAGGAGCAAAGCAGTGGCGGAACGGAGATTGGATGTGCACAAATTGCAATAATCATAATTATGCATCCCGTTTACAATGTGCAAGACTCGGAGAGATTCACTTTCTCTGCCCCTCAGTGCCATCTAAGCACATTCCTACAGACTTAGGATGGTTGTTGTTCTATGCTGCAAGTTTCTTTCGACCCAATTTTTCGGATCTCTTAATCGACTCTTCTAGTCTCCAAGATTCTTTGCTTCTTGAGCAACATCTTCACAGCCACCGTCTCCGTCGCTTGCAGTTGGTTGTCCGTCACTCGCCGATGGCGATTAGTCATCAGCATCTCAAACTGGAAGACCCTTTTCTTCATAATTACAAGCCTTCAGAGCTACGGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCGTTTCTTTCGAGAGATCTCTGCCAAGACTGCACCAAATTGCTCTCGAATCGTATCCGCGCCCTCGATCCAGCTCTCCATTCCGACGATAATTTAAGTTCTGCATCACCAGTGGAAGACATGCATGGGACTAATGGGAATCAGGATGATGCAAATTCTCTGGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGCAGTTGGAAGGACGGCATAACGGAAGGGAATGAAGCTGATGGAGTACCTGAATCTTCTTCTAGTGAACTGTCCTCTAAATTAAATTCCACCAAGACCTCGGGGCCTCGTATGTCGTGGGCTGATATGACTCAGGAAGATGAACTAGAAGAAGAGGAAGATGAGTACGAATCAGAAAAAAGATTAGTCAGTGTTAATGAGTCCACAAGGAAATTAACAATATCGAAGGTTATTGAGAAGCCACAGCTGTCTAGAGAGCAGAGAGAGTACATCAGGTTCATGAATGTTGGACGGAAGAAGGATTTTATTTGTCTGGAAAGGTTTAAAGGGAAATTAGTAAATATTCTTGAAGGACTCGAGCTTCATACAGGTATTTTTAGTGCTGCAGAACAGAAGAGAATAGTTGATCATGTTTATGCACTTCAGGAGATGGGCAAGAAGGGAGAATTAAGAGAACGAACATTTTCAGCTCCCAAAAAGTGGATGAAGGGAAAGGGGCGTGTAACCATGCAGTTCGGGTGCTGTTACAATTATGCACCTGATAAAAATGGCAATCCTCCTGGAATTCTTCGAAGTGAAATTGTGGATCCAATACCGTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAGGTGGCATGTACTTCCTCCAACATGTGTTCCTGATAGTTGCATTGTGAACATCTATGATGAAGGGGACTGTATTCCTCCTCATATTGACAACCACGATTTTGTTCGACCTTTTTGCACTGTGTCATTTCTCAGTGAATGCAATATTGTTTTTGGAACAAACCTTTCTATTGTAGGACCAGGTGAATTTTCTGGGCCAATTGCAATCCCTCTGCCTGTGGGGTCAGTTCTTGTGTTAAATGGAAATGGAGCTGATGTTGCTAAGCATTGTGTACCTGCAGTCCCTACAAAGAGGATATCGATTACATTTAGAAGAATAGATGAGCCCAAAAGGCCAATTGAGTATGCTCCAGAACCTGATTTGCAGGGACTCCAACCATTGCCCTATGAAGCAAGTGAAAATGATGTACCAACTTCTCCTGTATCATCAGAAAGGGAAATAAGGAGGCAGCCATTTAGGAGGGGTAGTCATATTAGAACCAGGGGATCTGGAAACAGAAGCGACACTCGATTTGATCAACGCAATCCAGGTAGAGCTCGACATAATTCAGCAGATAGGAGGAGCAGAGAGTAA 2691 44.15 MDGGKEGIEGKVASQLAMGEGKEGDWECSGCKNRNYAFRSFCNRCKQPRLLVDNKTPPDSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAIPGASFPTYSHYFARTQGGLDSKINLGLIGNGTSQHLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWLCNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHHWDNKRLNIGPANEQQQSYPGFEQMMGSSSDPNVGLYNSYPHESSNVAPNLEMPMHFPPQATAPTLLGKGAKQWRNGDWMCTNCNNHNYASRLQCARLGEIHFLCPSVPSKHIPTDLGWLLFYAASFFRPNFSDLLIDSSSLQDSLLLEQHLHSHRLRRLQLVVRHSPMAISHQHLKLEDPFLHNYKPSELRIASEFLTTWLPFLSRDLCQDCTKLLSNRIRALDPALHSDDNLSSASPVEDMHGTNGNQDDANSLGSWKDEAETNSLGSWKDGITEGNEADGVPESSSSELSSKLNSTKTSGPRMSWADMTQEDELEEEEDEYESEKRLVSVNESTRKLTISKVIEKPQLSREQREYIRFMNVGRKKDFICLERFKGKLVNILEGLELHTGIFSAAEQKRIVDHVYALQEMGKKGELRERTFSAPKKWMKGKGRVTMQFGCCYNYAPDKNGNPPGILRSEIVDPIPSLFKVIIRRLVRWHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLSIVGPGEFSGPIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRIDEPKRPIEYAPEPDLQGLQPLPYEASENDVPTSPVSSEREIRRQPFRRGSHIRTRGSGNRSDTRFDQRNPGRARHNSADRRSRE 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34342224 34352422 + ClCG01G020230.2 Cla01g01972 265561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01972 896 MobiDBLite consensus disorder prediction 816 896 - -
Cla01g01972 896 ProSitePatterns Zinc finger RanBP2-type signature. 26 45 IPR001876 -
Cla01g01972 896 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 401 892 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cla01g01972 896 Coils Coil 538 562 - -
Cla01g01972 896 Pfam 2OG-Fe(II) oxygenase superfamily 615 810 IPR027450 -
Cla01g01972 896 SUPERFAMILY Clavaminate synthase-like 611 812 - -
Cla01g01972 896 MobiDBLite consensus disorder prediction 510 536 - -
Cla01g01972 896 ProSiteProfiles Zinc finger RanBP2 type profile. 22 51 IPR001876 -
Cla01g01972 896 Pfam Zn-finger in Ran binding protein and others 303 324 IPR001876 -
Cla01g01972 896 Pfam Zn-finger in Ran binding protein and others 65 93 IPR001876 -
Cla01g01972 896 Pfam Zn-finger in Ran binding protein and others 22 49 IPR001876 -
Cla01g01972 896 MobiDBLite consensus disorder prediction 457 552 - -
Cla01g01972 896 MobiDBLite consensus disorder prediction 459 501 - -
Cla01g01972 896 SUPERFAMILY Ran binding protein zinc finger-like 185 211 IPR036443 -
Cla01g01972 896 SUPERFAMILY Ran binding protein zinc finger-like 22 50 IPR036443 -
Cla01g01972 896 ProSitePatterns Zinc finger RanBP2-type signature. 69 88 IPR001876 -
Cla01g01972 896 PANTHER RNA DEMETHYLASE ALKBH9B 401 892 - -
Cla01g01972 896 SUPERFAMILY Ran binding protein zinc finger-like 59 93 IPR036443 -
Cla01g01972 896 ProSiteProfiles Zinc finger RanBP2 type profile. 65 94 IPR001876 -
Cla01g01972 896 MobiDBLite consensus disorder prediction 867 896 - -
Cla01g01972 896 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 716 813 IPR005123 -
Cla01g01972 896 Gene3D - 599 819 IPR037151 -
Cla01g01972 896 SUPERFAMILY Ran binding protein zinc finger-like 297 329 IPR036443 -
Cla01g01972 896 SMART zf_4 67 91 IPR001876 -
Cla01g01972 896 SMART zf_4 305 329 IPR001876 -
Cla01g01972 896 SMART zf_4 189 212 IPR001876 -
Cla01g01972 896 SMART zf_4 24 48 IPR001876 -
Cla01g01972 896 Gene3D - 298 328 - -
Cla01g01972 896 Gene3D - 60 94 - -
Cla01g01972 896 Gene3D - 184 214 - -
Cla01g01972 896 Gene3D - 19 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01972 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 899.042
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01972 Cla-Chr1:34342224 Cla05g01044 Cla-Chr5:10752474 2.36E-42 dispersed
Cla01g01972 Cla-Chr1:34342224 Cla06g01083 Cla-Chr6:23451608 3.41E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1104 . . . Bda10g00180 . . . Bma15g00948 . . . Cma07g00432 . Car07g00381 Sed14g1183 Cpe19g00853 . Bhi03g00876 Tan03g2064 Cmetu04g2634 . Hepe04g1584 . . Cla01g01972 Cam01g2064 Cec04g1723 Cco04g1789 Clacu01g2085 Cmu01g1962 Cre04g1636 Cone8ag0845 . . . Lsi01g00609 . . Cme08g00918 . . . . . . . . . . Cmo07g00431 . . . . . . . . . . . . . . . . . . . . . Csa06g03316 Chy02g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01972 Cla_Chr01 FPKM 36.478203 33.825508 32.787121 31.859198 37.439297 34.042877 37.702591 20.464293 23.091988 24.596214