Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01974 ATGGATCATCCCAAACAGCAACAGCAGCAAGGAAATGATCAAGAAGGAAGCAATGGGAAAGGGTTCTTGTGCAGGCAAAGTAGTACAAGGTGGACTCCAACAACTGACCAAATTAGAATATTGAAAGAGCTTTATTATAACAATGGTGTTAGGTCCCCAAGCGCTGATCAAATTCAGAGGATCTCTGCTAGGCTTAGACAGTACGGTAAAATTGAAGGCAAGAACGTTTTTTATTGGTTTCAGAACCATAAGGCTCGTGAAAGACAGAAAAAAAGATTCACTACTACTACTGCTACTTCTACTGCTTCTTCACCCACTACTGATCATCATCTTCATCATCAACAGCAACAACAATTTTCTCTACCAAAACAACAACAACAAATTTCTTCAACTATAAACAACAATAATAACAATTGGAAGCCTGAAGATTGTTCCTCTTCCTCTCCATTGTTCCACAACAAATACCCACCAAATATCTCTCCTGCAGCTCCATCTTCTTCGGTTATGGTTGCCGTGGGGCATATGGGAAATTACGGATATGGGTCTGCCACTTTTGAGAACAGTTTCAGAGAATGTTCCATATCGTCGGGAGGAAGTAGCAGCGTAGTCGGGTATCGGAGCCACAACATGGGATCATGGATCGGCGTCGATCCGTATTCTTCTCCGGCGGCCGGAGCCAATGTCTTTGAAAAGACAAAATATGTTGAAGAATCCATAGAAGACGAGGACCAAGAGATCGAAACTCTCCCCCTCTTCCCCATCCACGGTGACCGGAATCTCGGGGGGTTCTGCAGCATGAAGCCGGAATATTCCGACAGCTACTACACTACCACTTGGTACGGCCGCTCTGACGACGGCGCCGCCGGTTCTCGGGCTTCGCTTGAACTCAGCCTCAACTCTTACGCCGCCATCTCTCCGGATGATGGAATCGTAGTCGGGTATCGGAGCCACAACATGGGATCATGGATCGGCGTCGATCCGTATTCTTCTCCGGCGGCCGGAGCCAATGTCTTTGAAAAGACAAAATATGTTGAAGAATCCATAGAAGACGAGGACCAAGAGATCGAAACTCTCCCCCTCTTCCCCATCCACGGTGACCGGAATCTCGGGGGGTTCTGCAGCATGAAGCCGGAATATTCCGACAGCTACTACACTACCACTTGGTACGGCCGCTCTGACGACGGCGCCGCCGGTTCTCGGGCTTCGCTTGAACTCAGCCTCAACTCTTACGCCGCCATCTCTCCGGATGATGGAATGTGA 1260 48.33 MDHPKQQQQQGNDQEGSNGKGFLCRQSSTRWTPTTDQIRILKELYYNNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTTTTATSTASSPTTDHHLHHQQQQQFSLPKQQQQISSTINNNNNNWKPEDCSSSSPLFHNKYPPNISPAAPSSSVMVAVGHMGNYGYGSATFENSFRECSISSGGSSSVVGYRSHNMGSWIGVDPYSSPAAGANVFEKTKYVEESIEDEDQEIETLPLFPIHGDRNLGGFCSMKPEYSDSYYTTTWYGRSDDGAAGSRASLELSLNSYAAISPDDGIVVGYRSHNMGSWIGVDPYSSPAAGANVFEKTKYVEESIEDEDQEIETLPLFPIHGDRNLGGFCSMKPEYSDSYYTTTWYGRSDDGAAGSRASLELSLNSYAAISPDDGM 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34366813 34371284 + ClCG01G020260.1 Cla01g01974 265563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01974 419 ProSiteProfiles 'Homeobox' domain profile. 24 90 IPR001356 GO:0003677
Cla01g01974 419 MobiDBLite consensus disorder prediction 88 146 - -
Cla01g01974 419 CDD homeodomain 29 91 IPR001356 GO:0003677
Cla01g01974 419 PANTHER PROTEIN WUSCHEL 3 303 - -
Cla01g01974 419 SMART HOX_1 26 94 IPR001356 GO:0003677
Cla01g01974 419 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 303 IPR044555 GO:0003700|GO:0099402
Cla01g01974 419 SUPERFAMILY Homeodomain-like 23 94 IPR009057 -
Cla01g01974 419 Gene3D - 28 94 - -
Cla01g01974 419 MobiDBLite consensus disorder prediction 7 28 - -
Cla01g01974 419 MobiDBLite consensus disorder prediction 94 146 - -
Cla01g01974 419 MobiDBLite consensus disorder prediction 1 28 - -
Cla01g01974 419 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 311 412 IPR044555 GO:0003700|GO:0099402
Cla01g01974 419 PANTHER PROTEIN WUSCHEL 311 412 - -
Cla01g01974 419 Pfam Homeodomain 28 89 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01974 - - - csv:101203055 421.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01974 Cla-Chr1:34366813 Cla06g01422 Cla-Chr6:27792731 4.62E-27 dispersed
Cla01g01974 Cla-Chr1:34366813 Cla04g01050 Cla-Chr4:25683936 2.09E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1106 . . Bda04g00024 . . . . . . . Cma03g00690 Cma07g00431 Car03g00635 Car07g00379 . . Cpe10g00659 Bhi03g00873 . . . . . . Cla01g01974 Cam01g2067 Cec04g1726 Cco04g1792 Clacu01g2088 Cmu01g1965 Cre04g1639 Cone8ag0846 Cone12ag0720 . . Lsi01g00606 . . Cme08g00921 . . . . . . . . . Cmo03g00716 Cmo07g00429 . . . . . . . . . . . . . . . . . . . . . Csa06g03319 Chy02g00579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007879 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60493 PF00046 Homeodomain 2.50E-17 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01974 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 2.373991 0.0 1.830554 0.0 0.920648 0.518968