Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01980 ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTGCCTTCTACCCTTTCGTTTTCCAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACCCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAGTTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATGTATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCGGAAAGATGCGACGAGTCCAACGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAAAGTAAAGAAAAAAGTGTTACAGACTGCAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGTGTTGGCGACATCCCGAAACAGAACAACTGA 1227 44.82 MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDCLLPFRFPDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHVSSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQSKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34450499 34453773 - ClCG01G020320.1 Cla01g01980 265569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01980 408 MobiDBLite consensus disorder prediction 320 345 - -
Cla01g01980 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 182 IPR011598 GO:0046983
Cla01g01980 408 CDD bHLH_AtILR3_like 137 211 - -
Cla01g01980 408 PANTHER TRANSCRIPTION FACTOR BHLH121 107 407 IPR044579 GO:0003700|GO:0055072
Cla01g01980 408 MobiDBLite consensus disorder prediction 374 408 - -
Cla01g01980 408 Coils Coil 172 227 - -
Cla01g01980 408 Gene3D - 131 234 IPR036638 GO:0046983
Cla01g01980 408 PANTHER TRANSCRIPTION FACTOR BHLH11 107 407 - -
Cla01g01980 408 SMART finulus 138 188 IPR011598 GO:0046983
Cla01g01980 408 MobiDBLite consensus disorder prediction 305 319 - -
Cla01g01980 408 MobiDBLite consensus disorder prediction 350 367 - -
Cla01g01980 408 Pfam Helix-loop-helix DNA-binding domain 133 182 IPR011598 GO:0046983
Cla01g01980 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 202 IPR036638 GO:0046983
Cla01g01980 408 MobiDBLite consensus disorder prediction 302 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01980 Cla-Chr1:34450499 Cla02g01113 Cla-Chr2:23899468 1.94E-89 dispersed
Cla01g01980 Cla-Chr1:34450499 Cla05g01539 Cla-Chr5:25681619 7.70E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60494 PF00010 HLH 8.50E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01980 - - csv:101222613 548.51