Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01981 ATGAAGATAGTTACTTACAACGTGAATGGTCTTAGGCCACGCATCGCACAGTTTGGTTCACTTCTTAAACTGCTCGATTCCTTCGATGCCGATATAATTTGCATTCAGGAAACGAAATTAAGGAGGCAGGACTTGCGAGCGGATTTAGTCATTGCTGATGGTTACGAATCATTCGTTTCTTGCACTCGTACCTCTGAGAAAGGTCGAACTGGCTACTCAGGGGTTGCAACATTTTGCCGTGTTAAGTCAGCATTTTCGAGTAATGAAGTAGCATTGCCAGTTCGGGCGGAGGAAGGCTTCACAGGTCTTCTAGAAAGTTCGCAGGAGGGAAAAGGCACAATGGCTGCAGTTGCAGAAGGGCTTGAGGAATTTTCGATAGAGGAGCTTCTCAAACTTGACAGCGAGGGCCGTTGTATAGTCACAGATCATGGTCATTTTGTTCTCTTCAACATTTATGGGCCTCGAGCTGAAAGTGATGATTCCGAAAGGGTTCTATTCAAATTAAAATTTTACAATGTGTTACAGAAAAGATGGGAGCATCTTCTGCATCTAGGAAAAAGGATATTTGTCGTTGGTGATCTCAATATTGCACCTACTTCAATGGATTGCTGCGATGCAGGACCAGATTTTGAGAATAATGAGTTTCGGAGATGGCTGAGATCTTTACAGGTGCCTTGTGGTGGCCGTTTCATTGACGTTTTCAGAGCAAAACATCCTGATCGAAGAGATGCATATACATGCTGGCCTCAAAGTACAGGTGCCGAGGTTTTCAATTATGGGACAAGGATCGACCATATATTGTGTGCAGGACCATGCTTACATGATGACAGCAACCTGCCAGGCCACAATATTGTAGCTTGTCATGTTATGGAATGTGACATACTGTTACAGTACAAACGCTGGAAAGATGGAAATTCTTTTAGGTACACAATTAAATCAAATTGGATGTCAGCTATTGGATTCATTTTAATGTTTGATCCTGAATTTATTCTGAGCATCAATTATTTGGTGATTCAACAGCCACCAGAACTTTCTGAAAGCTCCAAATTCTTAGACTTGACCTTGAAAAGAGGGTCTGCCATATCACTCTGTCTGTTATATAGGTGGAAGGGTGAGCGGACTGTTAAACTAGAAGGTTCTGATCATGCACCGGTTTGTGCAAGCCTACTGGAAATCCCTGATACTTCTCTACATAGTACTCCATCTTTATCTGCAAGATACAATCCCAAGATTCACGGGCTTCAGCAAACTCTTGTGTCAATGCTTCTGAAAAGACAAGCTGCTGAAGATTCAGCACCGTGCAAAATATCAAATTCATTTTCACGTGGGAACATCATCTTAGGGAATTGTTCTCAGGGACTTGATAATGGTGACCAATCAGGCTTTCTTTCTAGGGAATCTTGTTCTTTGACAAACCTAGAAACAGATAATTCTCTATTAAAAACAGGAGAGTGTTCTGGTGGAGGTTATGCCGAGGAGGCTGCATGCAACAGCTTAATTATGCACGAGTTTCTACATACAAAACCATTACCTGAGAAGGAAATTACGAAAAGAGTTAGAAGGTGTTCCCAGATGTCATTAAAGTCGTTCTTCCAGAAAAACTCAGTTGTTAGCAATGATGCTGATAGTTCTAATGCAGCAGATTCTTCAATTAACAAACCAGATACCTCCGAAACTAATCCTATCGAAATTCCTAGATCAAATACTCAAATTAGTGATTCAGGCCAACATTTAGAAGCATATCAGGGTCAGTCTCAAATTAATGCGTCAAATGTAGAGAAAGAGAAGAGTGGTGTTGCCTTGTTGGAGTGGCGGAGGATACAGCAGGTTATGCAGAATAGCATACCTCTTTGCAAGGGCCATAAGGAGACTTGTGTTGCTCGAGTAGTTAAGAAACAAGGTCCTAATAATGGCCGCAGATTTTATGTTTGTGCTCGTGCGGAGGGTCCGGCATCTAATCCTGAAGCAAATTGTGGTTACTTTAAATGGGCGGCTTCCAAATCTCGGCATAAATGA 2016 41.87 MKIVTYNVNGLRPRIAQFGSLLKLLDSFDADIICIQETKLRRQDLRADLVIADGYESFVSCTRTSEKGRTGYSGVATFCRVKSAFSSNEVALPVRAEEGFTGLLESSQEGKGTMAAVAEGLEEFSIEELLKLDSEGRCIVTDHGHFVLFNIYGPRAESDDSERVLFKLKFYNVLQKRWEHLLHLGKRIFVVGDLNIAPTSMDCCDAGPDFENNEFRRWLRSLQVPCGGRFIDVFRAKHPDRRDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHDDSNLPGHNIVACHVMECDILLQYKRWKDGNSFRYTIKSNWMSAIGFILMFDPEFILSINYLVIQQPPELSESSKFLDLTLKRGSAISLCLLYRWKGERTVKLEGSDHAPVCASLLEIPDTSLHSTPSLSARYNPKIHGLQQTLVSMLLKRQAAEDSAPCKISNSFSRGNIILGNCSQGLDNGDQSGFLSRESCSLTNLETDNSLLKTGECSGGGYAEEAACNSLIMHEFLHTKPLPEKEITKRVRRCSQMSLKSFFQKNSVVSNDADSSNAADSSINKPDTSETNPIEIPRSNTQISDSGQHLEAYQGQSQINASNVEKEKSGVALLEWRRIQQVMQNSIPLCKGHKETCVARVVKKQGPNNGRRFYVCARAEGPASNPEANCGYFKWAASKSRHK 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34454589 34461909 + ClCG01G020330.1 Cla01g01981 265570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01981 671 Pfam GRF zinc finger 616 665 IPR010666 GO:0008270
Cla01g01981 671 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2 1 661 - -
Cla01g01981 671 Pfam Endonuclease/Exonuclease/phosphatase family 4 269 IPR005135 GO:0003824
Cla01g01981 671 Gene3D Endonuclease/exonuclease/phosphatase 1 390 IPR036691 -
Cla01g01981 671 PANTHER AP ENDONUCLEASE 1 661 IPR004808 GO:0004518|GO:0006281
Cla01g01981 671 SUPERFAMILY DNase I-like 1 388 IPR036691 -
Cla01g01981 671 ProSiteProfiles AP endonucleases family 1 profile. 1 303 IPR004808 GO:0004518|GO:0006281
Cla01g01981 671 MobiDBLite consensus disorder prediction 539 570 - -
Cla01g01981 671 ProSitePatterns AP endonucleases family 1 signature 1. 30 39 IPR020847 GO:0003677|GO:0004519|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01981 K10772 APEX2; AP endonuclease 2 [EC:4.2.99.18] - vvi:100264349 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01981 Cla-Chr1:34454589 Cla10g01483 Cla-Chr10:30037499 4.23E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1116 . . . . . . . Bma15g00943 . . . . . . . Cpe19g00861 . . . . . . . . Cla01g01981 Cam01g2075 Cec04g1734 Cco04g1799 Clacu01g2096 Cmu01g1972 Cre04g1647 . . . . . . . Cme08g00929 . . . . Bpe10g00156 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03327 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011738 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01981 Cla_Chr01 FPKM 27.352129 30.025074 9.185721 9.739338 16.33077 14.502938 15.922324 0.813258 0.620189 0.635782