Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01985 ATGGAGATGGGGAGCAGTTGGAAATGGAGATGGAGAATGATTTTCATCTTCTCGCAGTTGATAATTACCACAATTTGTCAGCCACCCTTTGTCCAGCACAAGTGTTCCGACGACGTAGGCAACTATACAAACAGCAGCCCTTTCAAGAAAAATCTTGACGCCGTTCTCAACTCTATCTCCACCAATTCTCAGACCGACAAAGGTTTCTATGCGACCGCCGGCGAAGAACCAAACAGAGCCACCGCTATGGCGCTTTGTCGTGGTCCTGTTCCGTTGGAAAATTGTAGAGTTTGTGTGAAAAATTCAACCCAAAGGATTTCTCAAACTTGTCCGAACCAAAAGGAAGCTGCGGGATGGTACCCTGATTGCCAAATTATTTACTCAAACAAATCAATTCAAGGTGTGGTAGACAATTCTACCCCTACTTTTATGTTTTATAACACTATAAAAGCCCCAGACCCGAGTGTGTTTAACCAGGTACTAAGGAGCTTATTGGAAGAAATGCGAGTGCAGCTGGCTGAAACAGGGACTCCAACTCTAAAGTCTGCCAACGGAGTGAAAGAGGTTCCCAATAATGGTCCGAGTCCGAGTGATATCACACACATATATGGGCTGTTTGATTGTTTTTCTGATTTGTCTTTATCCGATTGTGATAGATGCCTCACCCTGCTTCAATCTTATCTTCCTGTTTGTTGTAACGCCAGCATTGGGGCTAGATTAATGGCAGATAGTTGCAAACTCAACTATGAGATCCCCCCCATCTATGCCTCCTTACTTCCAACCACCGTGCCACCACCACCCCCTTTCTATCTCTCTCTCCCTCCTACACAAACTCAAGGAGTTGACAACAATAATTCCGCTAGAAGAATTGTCATAATTGTTGTTTCTTCTACGCTTTCTTTTTCCATGCTCTTCTCCCGTATCCTCCTTATCTTTTTGAGAAAGAGGAAGCGAAACCAAAAGGTCAAGAGGATATTCGAAACAGCCGATCAATCCACAACCACAAATGAAATCCTAAGTATTGAGATGTTGCAATTTGTTTTCGAGACTATTGAGTTAGGAACAAATGAATTCTCAAGTGAAAATAAGATCGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGTAAACTTCCTAATGGACGAGAAATAGCCGTGAAAAGACTTGCAAAAGATTCACAACAGGGAGATGTAGAATTTAGAAACGAAGTATTGTTGGTAGCCAAACTTCATCATAGAAATTTGGTTAGGCTACTTGGATTTTGCTTGCAAAAGAATGAAAGACTTCTCGTATATGAGTTTGTACAGAATGCAAGTCTTGACCACTTCATATTTGATTTTCATAATCGGATCCTTTTAGATTGGGAAACACGATACAAAATTATAAATGGTATTGCACGAGGACTTCTTTATCTTCATGAAGAATCTCGTCTCTTAATCATCCATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGAGAAGATGAATCCAAAAATTGCAGATTTTGGTACAGCAAGAATGTTTGAAGTAGATGGAACTCATGGGAATACAAATAGAATTGTGGGAACTTATGGATATATGGCTCCAGAGTATGCATTGGATGGACAATTTTCAGTAAAATCGGATGTATTTAGCTTTGGTGTTTTGGTTCTTGAAATTATAAGTGGTCAAAAAAATATTTGTTTTCGCAATGGAAAAAAAGTGGAAGATCTCTCCAACTTTGCATGGAAAAATTGGAGGGCAGGAACACCAATGAATGTGATAGATCCAAAATTAAAAGATGGTTCTACTTTTGAAATGGTAAGATGCATACATATTGGACTATTGTGTGTTCAAGAAAATGCAGCAGATCGACCAACAATGGCTTCATTAATTTTGATGCTTGGTAGTTTCTCTCTCACTCTTCCTATACCATCCCAACCAGCATTCTTTATGCACAGTAATATTGAAGAATCTAACACTGTGGCAAAACCAAATCCTCCATTGGGAATGGCTCAATCTTTTCATTTCAAAAGTACACCTCTTGAGCCATCACTGAATGAAATTTCAATCACTGAGCTTCGTCCTCATTAG 2073 39.85 MEMGSSWKWRWRMIFIFSQLIITTICQPPFVQHKCSDDVGNYTNSSPFKKNLDAVLNSISTNSQTDKGFYATAGEEPNRATAMALCRGPVPLENCRVCVKNSTQRISQTCPNQKEAAGWYPDCQIIYSNKSIQGVVDNSTPTFMFYNTIKAPDPSVFNQVLRSLLEEMRVQLAETGTPTLKSANGVKEVPNNGPSPSDITHIYGLFDCFSDLSLSDCDRCLTLLQSYLPVCCNASIGARLMADSCKLNYEIPPIYASLLPTTVPPPPPFYLSLPPTQTQGVDNNNSARRIVIIVVSSTLSFSMLFSRILLIFLRKRKRNQKVKRIFETADQSTTTNEILSIEMLQFVFETIELGTNEFSSENKIGEGGFGAVYKGKLPNGREIAVKRLAKDSQQGDVEFRNEVLLVAKLHHRNLVRLLGFCLQKNERLLVYEFVQNASLDHFIFDFHNRILLDWETRYKIINGIARGLLYLHEESRLLIIHRDLKASNILLDEKMNPKIADFGTARMFEVDGTHGNTNRIVGTYGYMAPEYALDGQFSVKSDVFSFGVLVLEIISGQKNICFRNGKKVEDLSNFAWKNWRAGTPMNVIDPKLKDGSTFEMVRCIHIGLLCVQENAADRPTMASLILMLGSFSLTLPIPSQPAFFMHSNIEESNTVAKPNPPLGMAQSFHFKSTPLEPSLNEISITELRPH 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34494682 34498454 - ClCG01G020360.2 Cla01g01985 265574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01985 690 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 651 - -
Cla01g01985 690 SUPERFAMILY Protein kinase-like (PK-like) 346 659 IPR011009 -
Cla01g01985 690 Gene3D - 139 253 IPR038408 -
Cla01g01985 690 Gene3D - 28 131 IPR038408 -
Cla01g01985 690 CDD STKc_IRAK 364 628 - -
Cla01g01985 690 Pfam Protein kinase domain 359 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01985 690 Gene3D Phosphorylase Kinase; domain 1 318 433 - -
Cla01g01985 690 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Cla01g01985 690 ProSiteProfiles Protein kinase domain profile. 358 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01985 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Cla01g01985 690 Pfam Salt stress response/antifungal 152 250 IPR002902 -
Cla01g01985 690 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Cla01g01985 690 SMART serkin_6 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01985 690 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Cla01g01985 690 Gene3D Transferase(Phosphotransferase) domain 1 434 634 - -
Cla01g01985 690 ProSiteProfiles Gnk2-homologous domain profile. 139 254 IPR002902 -
Cla01g01985 690 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 15 651 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01985 Cla-Chr1:34494682 Cla03g00479 Cla-Chr3:5329503 0 dispersed
Cla01g02175 Cla-Chr1:35835434 Cla01g01985 Cla-Chr1:34494682 6.02E-79 dispersed
Cla01g02176 Cla-Chr1:35837378 Cla01g01985 Cla-Chr1:34494682 1.24E-116 dispersed
Cla01g02178 Cla-Chr1:35843422 Cla01g01985 Cla-Chr1:34494682 1.14E-67 dispersed
Cla03g00476 Cla-Chr3:5303470 Cla01g01985 Cla-Chr1:34494682 1.73E-117 dispersed
Cla01g01985 Cla-Chr1:34494682 Cla03g00475 Cla-Chr3:5298327 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80286 PF00069 Pkinase 1.40E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01985 - - cmo:103484586 736.102