Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01986 ATGGCTATGGCTTCCGTTGATGCCTTCTTCTTTTCATTCTCTCTCTTCTTCCACTTTCTTTCCCTCTCTCACTCTGCAACCATCACACTCCAAAACAACTGCACTCACACCATTTGGCCCGGCATTTTATCCGGCGCCGGCACCGCCCCTCTCTCCACCACCGGCTTCTCCCTCCTCCCCACCGCCGCCTCCGTCCTCTCCGTCCCACCCTCCTGGTCCGGCCGCATTTGGGCTCGCACCTACTGCTCCACCGACCCCTCCTCCGGCCGCTTCTCCTGCGCCACCGCCGACTGCGGCTCCGGTGCCGTCGCGTGCGGCGGCGCCTGCGCTGCCCCACCGGCTACTCTTGCCGAATTCACCCTTAACGGCGGCGGCGGCTTCGATTTCTACGACGTCAGCCTCGTGGACGGGTACAACATTGCGATGCAGATCGTGCCGGTGGGTGGGAAGGGTGGGAAGTCCGGAAATTGTACGGCCACCGGTTGCATTGCGGATTTGAACGGGGATTGTCCGCCGGAGCTTCAGGTGGCGAGGGGAGGCGGAGAGGATGGGGGGAAGCGGAGCGTGGCGTGTAAAAGCGCGTGTGTGGCGTTTGGGAAAGCAGAATATTGCTGCAGTGGGGCGTTTGCAAATCCGAACACGTGCAAGCCCAGTAATTACTCCAAGTTTTTCAAGAACAATTGCCCGTTGGCTTACAGTTACGCCTTCGATGACGGAACCAGCACTTTCACCTGTGTGTCAGCCAATTATGTCATTACCTTTTGCCCTTCTTCCCCTTTACCCAGGCATCTAGTGAACCACAACCGCAAGCGGCTGACATTTCAAGCTGCCGGCGTCGCACAGCACCGCCGTCCTTTGGCATTTTCACCGCCGTGTGGGTGGCCGTTGGCGGCTGCGCCATATTCAATGGGGCTGTTCTGCTATTTCCATCATTCTTCTCCCTTCTTCTCCACGTTGATTGTGCTTCTTCTTCTCAAAGAGGTTTCCGGTGCTACATTCACGTTCGTTAACAAGTGTGATTACACCGTCTGGCCGGGAATTCTCGCCAGCGCCGGCAGCCCGAAACTCGAAGCCACCGGTTTCGAGCTCAAAGCGGGCAGTTCTCGCTCTTTGGAAGCTTCGACCGGCTGGTCCGGTCGGTTCTGGGGCCGAACCAACTGTAATTTCGACGACTCCGGCCGTGGCAGCTGCAACACCGGCGACTGCGGCTCCGGAGAGATCGAGTGCAACGGTGCCGGCGCCACGCCTCCGGCGACGTTAGCCGAATTCACACTTGGCTCCGGCTCGCAGGATTTCTACGATGTCAGCCTCGTCGACGGCTACAATCTGCCGATGGTCATCGAGGGAACCGGCGGGTCCGGCACGTGCGCGTCAACTGGCTGCATTACGGACCTGAACCAACTTTGCCCGGCGGAGCTGAAGGCGGAGGATGGCGGCGCGTGTAAGAGTGCTTGTGAGGCATTTGCGACGCCGGAGTACTGCTGCAGCGGAGAATACAACTCGCCGGCGACTTGCCGGCCGTCAATGTACTCACAAATGTTCAAATCGGCGTGCCCAAAATCGTATAGTTACGCGTATGATGACGCGACTAGCACGTTCACCTGCAATGGAGCCGACTACACCATCACATTTTGCCCTTCTTCCCCAAGTCGAAAATCTTCGAGAGATTCACCGCCAATGATACCTGAGCCAAAGACAGAGCCATCAGGATCAGAGCCAATCACTGGGATGGGGTCGGGAGCGGGAACAATACAAGGAGCAGCTTTAAGTAGTTCTTGGCTTGCAGATATGGCCATAGGAGGGGACTCGTCCATTGCAACAAAACCAAGCTTGGCATTTCAATATGCTTCAATTTTGACATTCAATGTGGTTCTATCTTTGGTTCTCTCGTAA 1893 57.16 MAMASVDAFFFSFSLFFHFLSLSHSATITLQNNCTHTIWPGILSGAGTAPLSTTGFSLLPTAASVLSVPPSWSGRIWARTYCSTDPSSGRFSCATADCGSGAVACGGACAAPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVPVGGKGGKSGNCTATGCIADLNGDCPPELQVARGGGEDGGKRSVACKSACVAFGKAEYCCSGAFANPNTCKPSNYSKFFKNNCPLAYSYAFDDGTSTFTCVSANYVITFCPSSPLPRHLVNHNRKRLTFQAAGVAQHRRPLAFSPPCGWPLAAAPYSMGLFCYFHHSSPFFSTLIVLLLLKEVSGATFTFVNKCDYTVWPGILASAGSPKLEATGFELKAGSSRSLEASTGWSGRFWGRTNCNFDDSGRGSCNTGDCGSGEIECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMVIEGTGGSGTCASTGCITDLNQLCPAELKAEDGGACKSACEAFATPEYCCSGEYNSPATCRPSMYSQMFKSACPKSYSYAYDDATSTFTCNGADYTITFCPSSPSRKSSRDSPPMIPEPKTEPSGSEPITGMGSGAGTIQGAALSSSWLADMAIGGDSSIATKPSLAFQYASILTFNVVLSLVLS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34501575 34513572 + ClCG01G020370.1 Cla01g01986 265575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01986 630 MobiDBLite consensus disorder prediction 548 577 - -
Cla01g01986 630 ProSitePatterns Thaumatin family signature. 393 409 IPR017949 -
Cla01g01986 630 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Cla01g01986 630 PANTHER OS03G0233200 PROTEIN 327 563 IPR001938 -
Cla01g01986 630 SUPERFAMILY Osmotin, thaumatin-like protein 26 257 IPR037176 -
Cla01g01986 630 SUPERFAMILY Osmotin, thaumatin-like protein 331 547 IPR037176 -
Cla01g01986 630 Pfam Thaumatin family 337 546 IPR001938 -
Cla01g01986 630 Pfam Thaumatin family 32 256 IPR001938 -
Cla01g01986 630 CDD TLP-PA 332 545 - -
Cla01g01986 630 ProSiteProfiles Thaumatin family profile. 330 546 IPR001938 -
Cla01g01986 630 CDD TLP-PA 27 255 - -
Cla01g01986 630 SMART tha2 28 256 IPR001938 -
Cla01g01986 630 SMART tha2 333 546 IPR001938 -
Cla01g01986 630 PRINTS Pathogenesis-related protein signature 380 391 IPR001938 -
Cla01g01986 630 PRINTS Pathogenesis-related protein signature 536 545 IPR001938 -
Cla01g01986 630 PRINTS Pathogenesis-related protein signature 332 344 IPR001938 -
Cla01g01986 630 PRINTS Pathogenesis-related protein signature 431 447 IPR001938 -
Cla01g01986 630 PRINTS Pathogenesis-related protein signature 393 422 IPR001938 -
Cla01g01986 630 ProSiteProfiles Thaumatin family profile. 25 256 IPR001938 -
Cla01g01986 630 PANTHER OS03G0233200 PROTEIN 21 273 IPR001938 -
Cla01g01986 630 Gene3D Thaumatin 331 546 IPR037176 -
Cla01g01986 630 Gene3D Thaumatin 26 256 IPR037176 -
Cla01g01986 630 PANTHER - 327 563 - -
Cla01g01986 630 PANTHER - 21 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01986 - - - dcr:108222866 642.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01986 Cla-Chr1:34501575 Cla02g01153 Cla-Chr2:24879095 2.69E-81 dispersed
Cla03g00158 Cla-Chr3:1664560 Cla01g01986 Cla-Chr1:34501575 1.14E-36 transposed
Cla05g02479 Cla-Chr5:36192400 Cla01g01986 Cla-Chr1:34501575 1.29E-71 transposed
Cla09g00401 Cla-Chr9:3855637 Cla01g01986 Cla-Chr1:34501575 1.83E-62 transposed
Cla01g01986 Cla-Chr1:34501575 Cla10g00071 Cla-Chr10:737763 6.03E-80 wgd
Cla01g01986 Cla-Chr1:34501575 Cla05g01863 Cla-Chr5:30508879 9.06E-93 wgd
Cla01g01986 Cla-Chr1:34501575 Cla08g01416 Cla-Chr8:27028798 2.55E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01986 Cla_Chr01 FPKM 4.134786 5.09703 0.0 0.0 15.199847 16.267147 15.951488 0.517363 0.533297 0.461943