Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01988 ATGAAACGAGCCAATATCATCATTCTTCAATGGAGGAAATGGAGTCACTTCCAACCCAACCCCACTCCCGCTTACTTTTCCGGCAGGTGTTACAAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCATTATAAAAGGAAATTTCCACACTCTTCTTCGCTGTCAAGTTTCACCGCCTGTTTCCGCCGCCGTTTTTCTTCCGCCCACTTTTCCCCGATGGTCTCTGGTTTTCCCGACTTCAAAAACCGCCCACAGATTTCAATCCACCGGAATTCCGCCGCCAATCATGGGCTCTCTAGATAGTTCCGATGCCGGAATCGTCACCGTCGACGTCAAAACCGCCGAGAACCTCCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTTGAGGAGTTCAAGGACGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATCTGTTAAATTCTCCAAATGGTAGGGTGAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCGGTCTTTAAGAAAGACGATCGCCTCGTCGTGGGTTTCAAGCATTTGAAAGATCTAGGCGGAGGACATCTGGCTTGGTTGGAGAATGGATTACCTGAATTCGAATCTTTCCTTCCATTCAAACTCAGCAATCGGCACACCCGCCACTCAAAATCTCCTGTTGTTTCCACCGCCGTCCTTTCGCAAACTTTTCTCCGGCAGCCTCTGGTTTTTCCGACCTCAAAACCCACTCACAATCTCATCATGGCCTCCTCCGACAGTTCCAATGCCGGAGTCGTCACCGTCGACGTCGAGACGGCCAAGAAGCTGCTCGATTCCGGCTATCCTCTTCTGGACGTTAGGACCGTTGAGGAGTTCAGGAGAGGGCATGTGGCGACGGAGAAAATCGTCAATATTCCTTATCTGTTTAGTTTTGAACATGGTAGGGAAAAAAATGATCGGTTTCTAGAGGAGGTGTCGGCGGTTTGCGCAATTGGTATTAGGTCTCTGGAAGCCACTCAAGAACTCCAGGATAATGGTTTCAATAAGGTGAAAGATCAGGGTGGAGGGTTTGAAGCTTGGGTGAAGAATGGATTCCCAGGAGATATATTACGTGGACCGATATTATTCGCTATAGGACCAACCTATCGGACTGCGAAGCACCCGATTGCATTCTCTTTGGCTCAGGCAACAAGCAAAGATTTGCAGGGAAGATCGCAGTGTTCGTGTAGCGCCAGATTTGTCTTCCATAGTTCTACCCCTTCAACGATGGTGCTCGAGGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGCGATTACGCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGGGTTCTCACAATGGCGGGAAAAGGTGTTCGTGTACTGGTTACTCCTACCACTGACCTTGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCCCTTAAGCATCGTCAGAACAAAAAACAGCAACAGAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAGAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGATTTTGGTGAAGAAGATGATGGCAAACCTGAAAAACTGGAAAGTCTTCTGGCAGCTGTGAACAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACTCCTATCTTTACGGGAGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCGGCTGCAGCAGCAGGTGGCGTATCTGGTTTTGATTTTGGGGTTGATCCCAACTTAGATCCTGAACTTGCCCTCGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAAGCAGCTGCGAAAAAGGCCGCAGAGGAGAATACCAAGCAAGAAAAAGGAGCTGAGCAGCCATCTGGCTCACAGGATGCAACTATGACCGAGCGTTCTGGTCTTGCGACTTCTGATGCTGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATGCGCTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGCCGCATCAGATGATCCTGAGTTAGCACTTGGTGAGTTTTCGCTGTTTCACATTTTCCCACTTTTTAGGCTTTCACGAGCCATGTGTACAAAGTCTCTTCAGTTGTCTGTGCAGGAAGGCTCCAGTGACTCGACAAGCCAGACAGACATGAGTAAATTATTGGCCGATCAGTCTTTTGTGTCTTCTATTCTTGCTTCACTTCCAGGAGTAGATCCAAATGATCCCTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGAAAAGAAAGACGAAGACAAATCATCAAAGGAAGATGAGAAATGA 2538 47.75 MKRANIIILQWRKWSHFQPNPTPAYFSGRCYKTTCRPTKQERSKSNLIIKGNFHTLLRCQVSPPVSAAVFLPPTFPRWSLVFPTSKTAHRFQSTGIPPPIMGSLDSSDAGIVTVDVKTAENLLHSGYAFLDVRTVEEFKDGHVATEKIVNIPYLLNSPNGRVKNAQFLAEVSAVFKKDDRLVVGFKHLKDLGGGHLAWLENGLPEFESFLPFKLSNRHTRHSKSPVVSTAVLSQTFLRQPLVFPTSKPTHNLIMASSDSSNAGVVTVDVETAKKLLDSGYPLLDVRTVEEFRRGHVATEKIVNIPYLFSFEHGREKNDRFLEEVSAVCAIGIRSLEATQELQDNGFNKVKDQGGGFEAWVKNGFPGDILRGPILFAIGPTYRTAKHPIAFSLAQATSKDLQGRSQCSCSARFVFHSSTPSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERSGLATSDAENKAADLMDDENALLQQALAMSMDNPSATSDIRDIDMSEAASDDPELALGEFSLFHIFPLFRLSRAMCTKSLQLSVQEGSSDSTSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEEKKDEDKSSKEDEK 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34534926 34549049 + ClCG01G020390.1 Cla01g01988 265577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01988 845 Pfam von Willebrand factor type A domain 427 535 IPR002035 -
Cla01g01988 845 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 258 365 IPR036873 -
Cla01g01988 845 ProSiteProfiles Rhodanese domain profile. 123 183 IPR001763 -
Cla01g01988 845 ProSiteProfiles VWFA domain profile. 426 610 IPR002035 -
Cla01g01988 845 SUPERFAMILY vWA-like 425 596 IPR036465 -
Cla01g01988 845 CDD VWA_26S_proteasome_subunit 422 609 - -
Cla01g01988 845 MobiDBLite consensus disorder prediction 807 845 - -
Cla01g01988 845 Pfam Rhodanese-like domain 270 361 IPR001763 -
Cla01g01988 845 MobiDBLite consensus disorder prediction 680 700 - -
Cla01g01988 845 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 774 845 - -
Cla01g01988 845 Gene3D - 641 727 - -
Cla01g01988 845 ProSiteProfiles Rhodanese domain profile. 276 368 IPR001763 -
Cla01g01988 845 MobiDBLite consensus disorder prediction 661 701 - -
Cla01g01988 845 CDD RHOD 119 207 - -
Cla01g01988 845 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 422 752 - -
Cla01g01988 845 Coils Coil 653 678 - -
Cla01g01988 845 MobiDBLite consensus disorder prediction 827 845 - -
Cla01g01988 845 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 643 662 IPR003903 -
Cla01g01988 845 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 111 205 IPR036873 -
Cla01g01988 845 SMART rhod_4 113 204 IPR001763 -
Cla01g01988 845 SMART rhod_4 267 365 IPR001763 -
Cla01g01988 845 Gene3D - 105 187 IPR036873 -
Cla01g01988 845 Gene3D - 250 366 IPR036873 -
Cla01g01988 845 ProSiteProfiles Rhodanese domain profile. 184 207 IPR001763 -
Cla01g01988 845 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 422 752 - -
Cla01g01988 845 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 774 845 - -
Cla01g01988 845 CDD RHOD 270 360 - -
Cla01g01988 845 SMART VWA_4 423 596 IPR002035 -
Cla01g01988 845 Gene3D von Willebrand factor, type A domain 424 607 IPR036465 -
Cla01g01988 845 SMART uim 643 662 IPR003903 -
Cla01g01988 845 SMART uim 713 732 IPR003903 -
Cla01g01988 845 MobiDBLite consensus disorder prediction 661 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01988 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 694.501
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01988 Cla02g00101 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02015 Cla-Chr1:34761715 Cla01g01988 Cla-Chr1:34534926 1.15E-15 transposed
Cla02g01157 Cla-Chr2:24938523 Cla01g01988 Cla-Chr1:34534926 4.96E-24 transposed
Cla01g01988 Cla-Chr1:34534926 Cla10g00066 Cla-Chr10:704100 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01988 Cla_Chr01 FPKM 0.656566 0.995894 0.0 0.0 10.609691 7.254788 9.075263 0.0 0.0 0.0