Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cla01g01992	ATGGCGCCTCCCAAAGTCGATGCTGCGTACCTCAAGGAAATCGAGAAGGCCCGTAGAGACCTTCGCGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGATTAGCGTGGCATGATGCTGGTACTTACGACGCTGAAACGAAAACCGGCGGTCCTGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGAGTTGTTGCTGTGGAGATAACTGGCGGGCCATCCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGTCGTGCCAGAAGAAGGCCGCCTGCCAGATGCCAACCAAGGTGCTTCCCATTTAAGAGATGTCTTTTACAGGATGGGACTGACTGACAAGGATATCGTGGCATTATCTGGGGGACACACATTGGTACTTTATCTTCTTCCTTTCAACTATGAAGAAATTGATCTTCAGCTTTGTCTTTATCTTTTCCCTTTCATTAATCATAGTTATGGTTTGCTAATTCTTCAGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTCGTGGAATTGCTGAAAAATGACTCTCGATCCAAGGAACAACTATTGAAGCTTCCTACAGACAAGGCCTTGGTTGAGGATCCTCGGTTTTCCCAATATGTAAAGGCATACGCAAAGGATGAAGACAAGTTTTTCGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCAACGGGTCTCAAGAGCAGCGCCTCCTCCTCATGGGCAAATAAAATTCTTGTAGCCGCAATCGTAGCTGTTGTGGCGATACTGAGTTACAAAAGAGCCATGTCGCCTGAGTGGGATGCCTTTCTTCTTACTCTCTTTTGA	993	45.72	MAPPKVDAAYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAETKTGGPDGSIRFMDELNHTANKGLKIAVDFCETVKARHPKITYADLYQLAGVVAVEITGGPSIDFVPGRKDANVVPEEGRLPDANQGASHLRDVFYRMGLTDKDIVALSGGHTLVLYLLPFNYEEIDLQLCLYLFPFINHSYGLLILQGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKNDSRSKEQLLKLPTDKALVEDPRFSQYVKAYAKDEDKFFEDYAASHKKLSELGFTKPSTGLKSSASSSWANKILVAAIVAVVAILSYKRAMSPEWDAFLLTLF	330

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	34574476	34581454	-	ClCG01G020440.2	Cla01g01992	265581

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cla01g01992	330	Gene3D	-	17	280	-	-
Cla01g01992	330	ProSiteProfiles	Plant heme peroxidase family profile.	89	287	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Haem peroxidase superfamily signature	89	106	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Haem peroxidase superfamily signature	210	225	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Haem peroxidase superfamily signature	31	45	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Haem peroxidase superfamily signature	152	167	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Haem peroxidase superfamily signature	107	119	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	ProSitePatterns	Peroxidases proximal heme-ligand signature.	152	162	IPR019793	-
Cla01g01992	330	PANTHER	L-ASCORBATE PEROXIDASE 5, PEROXISOMAL	2	163	-	-
Cla01g01992	330	PANTHER	L-ASCORBATE PEROXIDASE 5, PEROXISOMAL	197	315	-	-
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	107	119	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	146	167	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	88	106	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	49	59	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	128	145	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	63	87	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	10	30	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PRINTS	Plant ascorbate peroxidase signature	31	46	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	Gene3D	Peroxidase, domain 2	130	273	-	-
Cla01g01992	330	Pfam	Peroxidase	18	261	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	ProSitePatterns	Peroxidases active site signature.	31	42	IPR019794	GO:0004601
Cla01g01992	330	SUPERFAMILY	Heme-dependent peroxidases	12	282	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
Cla01g01992	330	PANTHER	THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED	2	163	IPR044831	GO:0004601\|GO:0034599
Cla01g01992	330	PANTHER	THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED	197	315	IPR044831	GO:0004601\|GO:0034599
Cla01g01992	330	CDD	ascorbate_peroxidase	4	284	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cla01g01992	K00434	E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11]	-	csv:101220337	463.381

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Cla01g01992	Cla-Chr1:34574476	Cla03g00195	Cla-Chr3:2172289	5.33E-100	dispersed
Cla11g01395	Cla-Chr11:27481888	Cla01g01992	Cla-Chr1:34574476	7.74E-11	dispersed
Cla01g01992	Cla-Chr1:34574476	Cla02g00433	Cla-Chr2:4231990	6.75E-125	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi4g1143	.	.	.	Bda10g00192	.	.	.	.	.	.	.	.	.	.	Sed14g1205	.	Cpe10g00676	Bhi03g00841	Tan03g2100	Cmetu04g0811	.	Hepe04g1608	.	.	Cla01g01992	Cam01g2091	Cec04g1748	Cco04g1813	Clacu01g2109	Cmu01g1985	Cre04g1662	.	.	.	.	.	.	.	Cme08g00948	.	.	.	.	Bpe10g00164	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Csa06g03346	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0002255	2	2	2	1	2	2	3	2	2	2	1	2	1	2	2	3	2	4	3	2	2	2	2	2	2	1	2	3	4	1	63

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cla01g01992	Cla_Chr01	FPKM	1.716777	2.261451	1.33073	1.725759	0.88456	0.953407	1.215925	4.538632	4.376279	4.559752