Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02003 ATGGCCTCCTTTGCTGTGGTGCTATTCTCACACTTTGCAATTCTTTTGCTGTCTGTGTTGTCTTTGGGAAGTTCACTGAGCTTAGACTACTACGAGAAGACTTGCCCCGGTGCTGACTTTATCGTGACCAAAGCTGTCAGGTATGCAGCTTACAAAGACAAGACTGTGCCTGCTGCGCTCCTCCGGATGCACTTTCATGACTGCTTTATTAGGGGTTGTGATGCATCTGTACTGCTGAATTCAGTAGGGAACAACAAAGCAGAGAAAGATGGTCCGCCTAATTTGTCTTTGCACTCATTTTTTGTGATCGACAACGCGAAGAAAGAACTGGAATCCTATTGCCCTGGTGTTGTCTCTTGTGCTGATATCTTGGCTCTGGCTGCAAGGGATGCAGTTGTGCTTTCTGGAGGTCCAACATGGGATGTTCCTAAAGGGAGAAAGGATGGAAGGATATCTAAGGCTAGTGAAACAATACAATTGCCATCTCCAAGCTTCAACATTTCTCAGCTGCAACAGAGCTTCTCCCAAAGAGGATTATCCTTGGACGACCTAGTTGCTCTTTCAGGAGCACACACCTTAGGATTTGCTCATTGCTCATCCTTTCAAGGTAGAATCCGCAACTTCAGTCCAGCCAGCAACGTCGACCCAGAAATGAATCCATCCTTCGCAGCAAGTCTAAGAAACATGTGCCCAGTGAACAACAAGGCAAAAAATGCTGGCTCTAATATGGATACTTCTCCAACCACATTTGACAACAATTACTACAGACTGATACTCCAAAATAAGGGCCTGTTTTCTGCTGATCAAGCTCTGCTCAGCTTTCCCAAGACCAAGAATCTTGTTTATAAGTTTGCAAGCTCAAAGGAAGCTTTTAACCGTGCATTTGTTAATTCTATGATCAAGATGAGTAGCATTACTGGAGGTCAGGAGATCAGGAAGAATTGTAGAGCAGTGAACTAA 960 44.58 MASFAVVLFSHFAILLLSVLSLGSSLSLDYYEKTCPGADFIVTKAVRYAAYKDKTVPAALLRMHFHDCFIRGCDASVLLNSVGNNKAEKDGPPNLSLHSFFVIDNAKKELESYCPGVVSCADILALAARDAVVLSGGPTWDVPKGRKDGRISKASETIQLPSPSFNISQLQQSFSQRGLSLDDLVALSGAHTLGFAHCSSFQGRIRNFSPASNVDPEMNPSFAASLRNMCPVNNKAKNAGSNMDTSPTTFDNNYYRLILQNKGLFSADQALLSFPKTKNLVYKFASSKEAFNRAFVNSMIKMSSITGGQEIRKNCRAVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34663108 34664633 - ClCG01G020540.1 Cla01g02003 265592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02003 319 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 ProSiteProfiles Plant heme peroxidase family profile. 25 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 Pfam Peroxidase 44 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PANTHER PEROXIDASE 11 318 - -
Cla01g02003 319 Gene3D - 29 319 - -
Cla01g02003 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 Gene3D Peroxidase, domain 2 161 302 - -
Cla01g02003 319 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 PANTHER PEROXIDASE 25-RELATED 11 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g02003 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cla01g02003 319 CDD secretory_peroxidase 29 318 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02003 Cla-Chr1:34663108 Cla05g00838 Cla-Chr5:8305976 4.37E-120 dispersed
Cla05g01659 Cla-Chr5:28252564 Cla01g02003 Cla-Chr1:34663108 3.42E-80 transposed
Cla01g02003 Cla-Chr1:34663108 Cla08g01404 Cla-Chr8:26939999 1.87E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02003 K00430 - csv:101217954 598.586