Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02007 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGGTGCCGTCCTCGGACAGTATCGTACACAGTGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTGCTATGGTACAAGGATATTGGACAGCACATGAATGGGGAATTTTCAATGGCTGTAGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTCCAGCATCTAAAAAGGTTCGCCTCAGAACAACAATCAATGTCATCTGATGTGATCAAGAAAGCATTTCAAGCTACAGAAGAAGGATTCATTTCTTTAGTGACTAAACAGTGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTCATGCGATCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTCAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCACATATAGTAGTTTTGAAGCATAATGTGTGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCAGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCAGTGTATGAGCTTCAACCACATGATCAATTCATCATATTCGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAACAGGCTGTCGATATTATTCAAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAGTACGCCGCCACTTTCATGATGACATCACTGTCATAGTTGTATTTCTTGACTCGAATCTTGTAAGTAGAGCGAGCTCGGTCCAAGGCCCAACCACGTCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTTAACACAGGCTGA 1194 45.31 MLSSLMNFLRACWVPSSDSIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLKRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLMRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDIIQNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFLDSNLVSRASSVQGPTTSLRGCGVILPTKSLARCATPTELNTG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34701310 34705960 + ClCG01G020580.1 Cla01g02007 265596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02007 397 Gene3D - 37 366 IPR036457 -
Cla01g02007 397 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 386 - -
Cla01g02007 397 Pfam Protein phosphatase 2C 80 326 IPR001932 -
Cla01g02007 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Cla01g02007 397 PANTHER ALPHABET, ISOFORM E-RELATED 6 386 - -
Cla01g02007 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cla01g02007 397 CDD PP2Cc 48 355 IPR001932 -
Cla01g02007 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cla01g02007 397 SMART PP2C_4 41 353 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02007 Cla-Chr1:34701310 Cla02g01181 Cla-Chr2:25301031 0 dispersed
Cla10g00177 Cla-Chr10:1883487 Cla01g02007 Cla-Chr1:34701310 1.11E-33 dispersed
Cla02g00668 Cla-Chr2:7668762 Cla01g02007 Cla-Chr1:34701310 1.08E-140 transposed
Cla01g02007 Cla-Chr1:34701310 Cla10g00051 Cla-Chr10:559323 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02007 K01102 - csv:101219696 755.747