Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02012 ATGGTGTTTCTGCTCACATGGAGGATTCCGAATGCTTTAGTTTTCATGGCGGAAAGTTTAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCGAGGCTGCCGAGTTGCCTAACATGGACATTGTATCTGAGCGTCTTCGTCGTTGCTTCACAGCCTGTGGTACTCTCGATTACTCTGCCATTAAATCCGTCGCAACCAACTCCCGTTCTGCCGGCGGTGAGGGGAAAGTCCACCGCGGCCGTGGAAAAATTATCACGAGCGATCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACCCGCGTCATAAAGAATTCCCAGAATCCCTATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAAGTTATGGGGACGGTTAAAATCTCTGCTCAGAAAATTGCCTCCGGTGAGACAATTAGTGGGTGGTATCCGGTGCTTGGTTCAAATGGCAAGCCACCGAAGCTTGGCACTTCACTCAGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAACCCGCTATACCGACACGGCATTGCTGGAGATCCCGAGCATAAGGGTGTGCGACACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATTGTTGGTTGGTCGGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGCTGCCAAGAGGTGGAGATTTGACTCTTGGTGACCTCCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGCTAGTTTGGGATGATAAGACTTCTCACGATAAGTTCTTCATCAACACGGAAGGATTGATGCAGACACATGACGAGGAAACCAGAAAATTTTTCAAGCATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTTGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTAGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGTGATGGTCGATACGATACACCTGAGCATCGATTGTTCCATGACCTTGACACAGTATTTAAGGATGATTTTCATAACCCTACAATTCCTCCTGGAGCCACAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGGTGGAACAGAGCTACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTACTCATTGGCACGATGCTTTAATAAAGATAGAGCGTATTTCATGGATACTAAGCCCTCACGTAACTTTCTTAGATGATGGTTCATTAAAAGTTCCAGAGGATGACCCTAAAGTATATGTTTCGAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATTTTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCGCAGAACCTTGTTTGTGCAAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCACAACATTTCATTTATATTGAAAATCAGTATTTTATTGGATCATCATACGGATGGCCAGGATATAAAAATGCCGGAGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCGAAGGAAAGATTTGTTGTATATATTGTCATACCAATGTGGCCTGAGGGAGATCCGAATAGCGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGCACCCTCTGGACTTTCTAAATTTTTACTGCCTTGGAAAACGGGAAGAACTTCCTGAGAATGGGCCAACCACTGATGATGCAACGGCATGTAATTCACTAAAACATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAAGACACCGAGATAGCCACAGGCGCATATCAGCCCCATCACACGTGGGCAAAAAAAAAGAAACACCCACATGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTCAATCCATGTTTCGAGGAGCCAGAAACTTTGGAATGTGTAAGAAAAGTCAATGGGATTGCTGAGGATAACTGGAACAGATTCACAGCCGATGAATTCACGACATTGCAGGGTCACCTTCTCAGGTATCCGGTGCTTGTAGATGGTGACGGAAAAGTCAGCCCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACCACATAG 2619 44.83 MVFLLTWRIPNALVFMAESLEEVYLHGDLDLKIFEAAELPNMDIVSERLRRCFTACGTLDYSAIKSVATNSRSAGGEGKVHRGRGKIITSDPYVTVRVPQATVARTRVIKNSQNPYWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKISAQKIASGETISGWYPVLGSNGKPPKLGTSLRIEMKFTSVEENPLYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMLVWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGATAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCRRITHWHDALIKIERISWILSPHVTFLDDGSLKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPLDFLNFYCLGKREELPENGPTTDDATACNSLKHRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPETLECVRKVNGIAEDNWNRFTADEFTTLQGHLLRYPVLVDGDGKVSPLPGHENFPDVGGKIIGSHSTAIPDVVTT 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34738695 34746288 + ClCG01G020625.1 Cla01g02012 265601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02012 872 Gene3D C2 domain 26 198 IPR035892 -
Cla01g02012 872 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 372 407 IPR001736 GO:0003824
Cla01g02012 872 SUPERFAMILY Phospholipase D/nuclease 569 802 - -
Cla01g02012 872 PANTHER PHOSPHOLIPASE D 20 872 IPR015679 -
Cla01g02012 872 CDD C2_plant_PLD 23 190 - -
Cla01g02012 872 ProSiteProfiles C2 domain profile. 55 167 IPR000008 -
Cla01g02012 872 SMART C2_3c 28 166 IPR000008 -
Cla01g02012 872 Gene3D Endonuclease Chain A 541 767 - -
Cla01g02012 872 PANTHER PHOSPHOLIPASE D DELTA 20 872 - -
Cla01g02012 872 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 190 IPR035892 -
Cla01g02012 872 Gene3D Endonuclease Chain A 242 480 - -
Cla01g02012 872 SMART pld_4 372 407 IPR001736 GO:0003824
Cla01g02012 872 SMART pld_4 717 744 IPR001736 GO:0003824
Cla01g02012 872 PIRSF PLD_plant 14 872 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cla01g02012 872 Pfam C2 domain 27 169 IPR000008 -
Cla01g02012 872 Pfam Phospholipase D Active site motif 718 744 IPR001736 GO:0003824
Cla01g02012 872 Pfam Phospholipase D Active site motif 372 407 IPR001736 GO:0003824
Cla01g02012 872 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 717 744 IPR001736 GO:0003824
Cla01g02012 872 SUPERFAMILY Phospholipase D/nuclease 212 476 - -
Cla01g02012 872 Pfam Phospholipase D C terminal 793 861 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02012 Cla-Chr1:34738695 Cla06g00016 Cla-Chr6:201686 0 dispersed
Cla01g02012 Cla-Chr1:34738695 Cla08g01396 Cla-Chr8:26830441 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02012 K01115 - csv:101217251 1679.84