Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02014 | ATGAGTTCCTGTATACCTCAAGACAACGGCTTGCTCCCGGGGTTCGTTGATCCCGAACAATCAACTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCTGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCAGTGCTCGTCTGTTGGGTGTTGTGGGCACATCATATGGCATTTGGCGACCGATTGTTCTGGCTCATTGGTAGGCCCGGCATAGCGCTGTCCGAAAGTTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTCTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTCGTGTTACTCGCTGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTCTTTGTTACACTGTGGGCGCATTCTGTATATGGGGGAATGGATTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCGAGACAGGCAAAACTTCCCACCAAACAACATACTGCACATGGTTGGCGGTGCAGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGTGGGTCGTATTACATCGCTAGCCATTTTGAACACACATGTTTGCACTGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGGGCTATTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGGCTTGTAGACACTCTTGCAGCTGTGGTGATGGGCGTCCTCGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGAAGGTTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGCGTCTTCCACACGCACGCTGTGGCTGGTTCCATGGGAGGCCTTCTCACAGGTTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACAGTCCAGGCTTCCTGTACGCTATCTCCGATAGAAAGCTCAAAGATGGCCTCAAACAAATCGGCATCCAGTTCGCAGGAGCACTGTTTATTACCCTCTGGAATGCCATTTTTACCAGCATTATATGTTACCTGATTAGCCATATTGTTAACTTACGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCTGCTCACGGAGAAGAACCCTACGCATTGTGGGGTGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTTCCTTCATTATGCAGGTGGGATTAG | 1419 | 49.89 | MSSCIPQDNGLLPGFVDPEQSTPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHHMAFGDRLFWLIGRPGIALSESYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFAVGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAIQGIITGLVCITPGAGLVDTLAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYSPGFLYAISDRKLKDGLKQIGIQFAGALFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34754990 | 34756632 | - | ClCG01G020650.1 | Cla01g02014 | 265603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02014 | 472 | ProSitePatterns | Ammonium transporters signature. | 182 | 207 | IPR018047 | GO:0008519|GO:0016020|GO:0072488 | |
Cla01g02014 | 472 | PANTHER | AMMONIUM TRANSPORTER | 10 | 470 | - | - | |
Cla01g02014 | 472 | TIGRFAM | amt: ammonium transporter | 30 | 444 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Cla01g02014 | 472 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 10 | 470 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Cla01g02014 | 472 | Gene3D | Ammonium transporter AmtB like domains | 16 | 447 | IPR029020 | - | |
Cla01g02014 | 472 | Pfam | Ammonium Transporter Family | 32 | 444 | IPR024041 | GO:0008519|GO:0016020|GO:0072488 | |
Cla01g02014 | 472 | SUPERFAMILY | Ammonium transporter | 25 | 426 | - | - | |
Cla01g02014 | 472 | PRINTS | Rhesus blood group protein signature | 127 | 143 | IPR002229 | GO:0005887 | |
Cla01g02014 | 472 | PRINTS | Rhesus blood group protein signature | 221 | 239 | IPR002229 | GO:0005887 | |
Cla01g02014 | 472 | PRINTS | Rhesus blood group protein signature | 252 | 274 | IPR002229 | GO:0005887 | |
Cla01g02014 | 472 | PRINTS | Rhesus blood group protein signature | 307 | 325 | IPR002229 | GO:0005887 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02014 | Cla-Chr1:34754990 | Cla08g01306 | Cla-Chr8:25962297 | 0 | dispersed | |
Cla01g02014 | Cla-Chr1:34754990 | Cla05g00396 | Cla-Chr5:3596803 | 1.07E-17 | transposed | |
Cla01g02014 | Cla-Chr1:34754990 | Cla06g00721 | Cla-Chr6:9209585 | 1.11E-17 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02014 | K03320 | - | csv:101218977 | 928.702 |