Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02014 ATGAGTTCCTGTATACCTCAAGACAACGGCTTGCTCCCGGGGTTCGTTGATCCCGAACAATCAACTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCTGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCAGTGCTCGTCTGTTGGGTGTTGTGGGCACATCATATGGCATTTGGCGACCGATTGTTCTGGCTCATTGGTAGGCCCGGCATAGCGCTGTCCGAAAGTTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTCTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTCGTGTTACTCGCTGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTCTTTGTTACACTGTGGGCGCATTCTGTATATGGGGGAATGGATTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCGAGACAGGCAAAACTTCCCACCAAACAACATACTGCACATGGTTGGCGGTGCAGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGTGGGTCGTATTACATCGCTAGCCATTTTGAACACACATGTTTGCACTGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGGGCTATTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGGCTTGTAGACACTCTTGCAGCTGTGGTGATGGGCGTCCTCGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGAAGGTTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGCGTCTTCCACACGCACGCTGTGGCTGGTTCCATGGGAGGCCTTCTCACAGGTTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACAGTCCAGGCTTCCTGTACGCTATCTCCGATAGAAAGCTCAAAGATGGCCTCAAACAAATCGGCATCCAGTTCGCAGGAGCACTGTTTATTACCCTCTGGAATGCCATTTTTACCAGCATTATATGTTACCTGATTAGCCATATTGTTAACTTACGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCTGCTCACGGAGAAGAACCCTACGCATTGTGGGGTGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTTCCTTCATTATGCAGGTGGGATTAG 1419 49.89 MSSCIPQDNGLLPGFVDPEQSTPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHHMAFGDRLFWLIGRPGIALSESYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFAVGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAIQGIITGLVCITPGAGLVDTLAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYSPGFLYAISDRKLKDGLKQIGIQFAGALFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34754990 34756632 - ClCG01G020650.1 Cla01g02014 265603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02014 472 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cla01g02014 472 PANTHER AMMONIUM TRANSPORTER 10 470 - -
Cla01g02014 472 TIGRFAM amt: ammonium transporter 30 444 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cla01g02014 472 PANTHER AMMONIUM TRANSPORTER MEP2 10 470 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cla01g02014 472 Gene3D Ammonium transporter AmtB like domains 16 447 IPR029020 -
Cla01g02014 472 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cla01g02014 472 SUPERFAMILY Ammonium transporter 25 426 - -
Cla01g02014 472 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005887
Cla01g02014 472 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005887
Cla01g02014 472 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005887
Cla01g02014 472 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02014 Cla-Chr1:34754990 Cla08g01306 Cla-Chr8:25962297 0 dispersed
Cla01g02014 Cla-Chr1:34754990 Cla05g00396 Cla-Chr5:3596803 1.07E-17 transposed
Cla01g02014 Cla-Chr1:34754990 Cla06g00721 Cla-Chr6:9209585 1.11E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02014 K03320 - csv:101218977 928.702