Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02033 ATGGCGTTTTCCGATGAGAACAATCCCAGCTTGATCAAACCCACTTCATTTCTTCCAGGAGGAGGGTTGGAGAAGAGTGGGAGAGCATTTGGGCAGGAGATTAATAGAGCTAATAACAATCGGAGAGCTCTTAATGCCATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGTCCTATCAGGAAAGCAAGAGATTTGCGAGAAGAAGCAGGTTGATCCATTTCATAGACCCATTACAAGGAAATTTGCTGCTCAAATTGCGAGTAGTCAACAGCTTCATCATCCTCAGGAAAATAATAAGCCTAACTCATTTCTTACAAACTCAAATGCGTTTGGACATTCCATATTTGTAGACGACGATTGCAAAACAGTAGAAAATGATCATCCAGTTCCAATGTTCTTGGAGAAATCAGAACCATCATTGCCTCAGGAAGCAAGCCAGATGGAGGAGGTTGAAATGGAGGATATAGCAGAAGACGAAGACCCAGTAATCGACATCGACAGTGTCGATTCCGAGAACCCGCTTGCCGTTGTTGAGTACGTGGACGATCTCTACGCACACTATAGAAAAATCGAGAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAACTGACATTAATGAGAAGATGAGAGCTATACTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACTTTGTTTCTCACTGTGAATCTCATAGACAGATTTTTGGCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTTTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGCGATGCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACACCCTTTGTTTTCCTTCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTGAGCTAATGGCATTCTTCTTGATCGAACTCTCGCTCGTCGAGTATGAAATGCTGAGGTTCCCACCCTCTCTCCTAGCAGCAGCGGCAATTTACACAGCTCAATGTACTCTCACCAGAGTCGATGGTTGCTGGAGCCGGACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGACTAATGGTGGGTTTCCATCAAAAGGCGGCGACGGGGAAGCTTACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1335 42.85 MAFSDENNPSLIKPTSFLPGGGLEKSGRAFGQEINRANNNRRALNAINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHPQENNKPNSFLTNSNAFGHSIFVDDDCKTVENDHPVPMFLEKSEPSLPQEASQMEEVEMEDIAEDEDPVIDIDSVDSENPLAVVEYVDDLYAHYRKIENSSCVPPNYMTKQTDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLAQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETAMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFPPSLLAAAAIYTAQCTLTRVDGCWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34872095 34874730 - ClCG01G020840.1 Cla01g02033 265622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02033 444 SUPERFAMILY Cyclin-like 317 436 IPR036915 -
Cla01g02033 444 Pfam Cyclin, N-terminal domain 191 316 IPR006671 -
Cla01g02033 444 CDD CYCLIN 219 308 IPR013763 -
Cla01g02033 444 SMART cyclin_7 225 309 IPR013763 -
Cla01g02033 444 SMART cyclin_7 322 405 IPR013763 -
Cla01g02033 444 ProSitePatterns Cyclins signature. 220 251 IPR006671 -
Cla01g02033 444 SUPERFAMILY Cyclin-like 179 315 IPR036915 -
Cla01g02033 444 MobiDBLite consensus disorder prediction 1 23 - -
Cla01g02033 444 PANTHER CYCLINS 29 439 IPR039361 -
Cla01g02033 444 Gene3D - 190 431 - -
Cla01g02033 444 PIRSF Cyclin_A_B_D_E 21 444 IPR039361 -
Cla01g02033 444 PANTHER CYCLIN-B2-1 29 439 - -
Cla01g02033 444 Gene3D - 204 316 - -
Cla01g02033 444 SMART Cyclin_C_2 318 436 IPR004367 -
Cla01g02033 444 CDD CYCLIN 316 404 IPR013763 -
Cla01g02033 444 Pfam Cyclin, C-terminal domain 318 434 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02033 Cla-Chr1:34872095 Cla02g02191 Cla-Chr2:37061403 3.49E-69 dispersed
Cla01g02033 Cla-Chr1:34872095 Cla01g02038 Cla-Chr1:34895889 5.32E-64 proximal
Cla04g00589 Cla-Chr4:19809750 Cla01g02033 Cla-Chr1:34872095 2.38E-87 transposed
Cla09g02222 Cla-Chr9:39812850 Cla01g02033 Cla-Chr1:34872095 1.24E-57 transposed
Cla07g00521 Cla-Chr7:7735317 Cla01g02033 Cla-Chr1:34872095 6.61E-16 transposed
Cla01g02033 Cla-Chr1:34872095 Cla11g01821 Cla-Chr11:31856446 1.43E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02033 K21777 - csv:101216622 834.328