Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02042 ATGATTGATTCTCCAGCAGGACTGCTGAGCCGAGGATTTCAACTCTCTTTCAAACTTTCTGAAGCCTCAGAGCTTAAGATTGGATTATATTTGAGGAATAGTGATTATGCACTTCACAATGAGGATGGGAGTTCCTCAATTGGAGACAGCACAAATGTATCTACGAGGCCTGAAGTTGTCAACATTGGGGCTTTATTCTCCTTCCGTTCTATGATAGGCAAAGTTGGAAAAATTGCTGTAGAAGCTGCTGTTGAGGATGTAAATTCTGATCCATCCATTCTGGGGGGGACAAAACTGAAGCTTAGTTTACATGATACCAATTATACCTTGCGTTTCATGGAGACTAAGACCATGGCCATAATTGGCCCTCAAAACTCTGTTACTGCTCATGTTATATCTCATATTGCAAATGAGGTCCAAGTTCCTCTCTTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTACCAATGGAAAGAGGTGATTGCCATATTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCTGATGCAAGTCGAGATGAGGTCACTAATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTTGTGCTGAATGTGGCTCAATATCTTGGATTGACAGGACCCGGGTATGTGTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCGCCTCTTCCTTCTGCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATACACCAGATTCTGCCCTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTAATGGAAAGTCATCAATGGGTCCTCTTGGATTGAGTACTTATGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAAACTTTCGAAGTTATCTGGGACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCGTCTTCAATGGTGGGAAGACACTACTTCACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGATAGGGACTTAATTCACCCTGCATTTGAAGTGATCAATATAATCGGCACAGGGGAAAGAAGAATTGGTTATTGGTCTAACTATTCTGGCTTGTCAATTGTGCCTCCTGAAACCCTTTACTCGAAACCACCAAACCGAACCAATTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCTACACAGAAGCCTCGTGGGTGGGCATTTCCAAACAGTGGAAGATACTTGAGAATTGGAGTTCCGAGACGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCACTGGCTACTGCGTTGATGTCTTCACTGCAGCAATCAACATGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCTTTCGGGGATGGCCTTACTAATCCTAGCGAAACCGAACTTATTCGTCTAATCACAACTGGGGTCTTTGATGGAGCGATAGGTGACATTGCAATTATCACAAACCGAACCAGGATGGCAGATTTTACACAACCATACATCGAGTCTGGCCTAGTAGTTGTAGCTCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCAAAGATGTGGTGTGTTACTGCTGCTTCTTTTCTTGTAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGAATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATTACTATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCCCATCGGGAAAACACAGTCAGTGCCCTTGGTCGCCTCGTGCTGCTTATATGGTTATTTGTTGTTCTAATTATCAACTCAAGCTATACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGAATTGAAACTTTGATTTCAAACAACGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCAAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAACGATGGGCCAGCAAATAATGGTGTTGCTGCTATAATCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGCGAATACAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCCCCGTGACTCTCCTTTAGCAGTTGACTTGTCCACAGCTATTCTAAGACTGTCCGAAAACGGGGATCTTCAAAGGATCCATGACAAATGGTTAATGAAAAGTGCTTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGTTTGCTCGCTCTATCGATATACCTCTTTCAAATGGTGCGCCAATATAGCGAACATTACTCTGAAGAACTCGGGTCTTCTGAGCAAACCTCTCGATCTGCAAGCCTGCATAGATTCCTTTCTTTTGCAGATGAAAAGGAAGAAGCCTTCAGAAGTCGATCCAAGCAAAAACAGATGCAGGAAGCTTCAGTTAGAAGCATTAACGAAGAAATTTCCACAGGCAGTTCAAGAAAATTTGGCCATGGTTATACTGATGGTATTGATGATGCATGA 2862 41.75 MIDSPAGLLSRGFQLSFKLSEASELKIGLYLRNSDYALHNEDGSSSIGDSTNVSTRPEVVNIGALFSFRSMIGKVGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYTLRFMETKTMAIIGPQNSVTAHVISHIANEVQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYYQWKEVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTNALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPSASMENIQGLVALRLYTPDSALKRNFVSRWTNLTNGKSSMGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSKLSKLSGTDVGTLNLNSMSVFNGGKTLLHKILEVNFTGITGSVEFTPDRDLIHPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRTNSNQKLYDVVWPGQATQKPRGWAFPNSGRYLRIGVPRRVSYQEFVSQVEGTDMFTGYCVDVFTAAINMLPYAVPYKLIPFGDGLTNPSETELIRLITTGVFDGAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTPKMWCVTAASFLVVGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRENTVSALGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPANNGVAAIIDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDLSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALSIYLFQMVRQYSEHYSEELGSSEQTSRSASLHRFLSFADEKEEAFRSRSKQKQMQEASVRSINEEISTGSSRKFGHGYTDGIDDA 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34928727 34933040 + ClCG01G020920.1 Cla01g02042 265631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02042 953 Gene3D - 485 601 - -
Cla01g02042 953 Gene3D - 602 728 - -
Cla01g02042 953 Pfam Receptor family ligand binding region 78 428 IPR001828 -
Cla01g02042 953 CDD GluR_Plant 491 831 - -
Cla01g02042 953 Gene3D - 167 444 - -
Cla01g02042 953 SUPERFAMILY Periplasmic binding protein-like I 56 482 IPR028082 -
Cla01g02042 953 Gene3D - 776 838 - -
Cla01g02042 953 PANTHER GLUTAMATE RECEPTOR 3.6 41 941 - -
Cla01g02042 953 Pfam Ligand-gated ion channel 832 864 IPR001320 GO:0015276|GO:0016020
Cla01g02042 953 MobiDBLite consensus disorder prediction 913 953 - -
Cla01g02042 953 Pfam Bacterial extracellular solute-binding proteins, family 3 511 831 IPR001638 -
Cla01g02042 953 CDD PBP1_GABAb_receptor_plant 61 448 IPR044440 -
Cla01g02042 953 MobiDBLite consensus disorder prediction 919 942 - -
Cla01g02042 953 SUPERFAMILY Periplasmic binding protein-like II 469 834 - -
Cla01g02042 953 PIRSF IGluLR_plant 42 946 IPR017103 -
Cla01g02042 953 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 941 - -
Cla01g02042 953 SMART GluR_14 492 833 IPR001320 GO:0015276|GO:0016020
Cla01g02042 953 Gene3D - 78 419 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02042 Cla-Chr1:34928727 Cla02g00838 Cla-Chr2:11431775 0 dispersed
Cla01g02042 Cla-Chr1:34928727 Cla11g01836 Cla-Chr11:31994387 1.35E-106 wgd
Cla01g02042 Cla-Chr1:34928727 Cla02g00340 Cla-Chr2:3312003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02042 K05387 - csv:101213408 1682.92