Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02066 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAATATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGATTTGCACACTCTAAGGCAGAGGCAACCAGGAAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGCGAAGGCCATGGAAGTGCCGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCACCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCGTCAACCAGTGAAAAGGCTGCAGCTATAGCAGCATTTCAAATTGATGTTGCACAAAATCCAAACTACCTTCCCAGTATCCTCAGGAATATCAATATTTGCATTCATCTAATCTACAGTACTACATTGAAATCAAGAATATAA 1893 43.37 MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSDQSKSVKNISKKDMEICPDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAFQIDVAQNPNYLPSILRNINICIHLIYSTTLKSRI 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35111622 35115303 + ClCG01G021180.2 Cla01g02066 265655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02066 630 MobiDBLite consensus disorder prediction 31 51 - -
Cla01g02066 630 MobiDBLite consensus disorder prediction 162 190 - -
Cla01g02066 630 MobiDBLite consensus disorder prediction 115 140 - -
Cla01g02066 630 MobiDBLite consensus disorder prediction 100 114 - -
Cla01g02066 630 CDD STKc_phototropin_like 216 577 - -
Cla01g02066 630 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 590 - -
Cla01g02066 630 PANTHER FLIPPASE KINASE 1-RELATED 5 590 - -
Cla01g02066 630 SMART serkin_6 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02066 630 MobiDBLite consensus disorder prediction 89 140 - -
Cla01g02066 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Cla01g02066 630 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02066 630 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02066 630 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02066 630 MobiDBLite consensus disorder prediction 1 76 - -
Cla01g02066 630 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Cla01g02066 630 SUPERFAMILY Protein kinase-like (PK-like) 192 581 IPR011009 -
Cla01g02066 630 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cla01g02066 630 MobiDBLite consensus disorder prediction 1 19 - -
Cla01g02066 630 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02066 Cla-Chr1:35111622 Cla10g01319 Cla-Chr10:28103576 0 dispersed
Cla04g00118 Cla-Chr4:3421773 Cla01g02066 Cla-Chr1:35111622 0 transposed
Cla11g00263 Cla-Chr11:3058151 Cla01g02066 Cla-Chr1:35111622 1.78E-147 transposed
Cla01g01115 Cla-Chr1:18346000 Cla01g02066 Cla-Chr1:35111622 0 wgd
Cla01g02066 Cla-Chr1:35111622 Cla02g00317 Cla-Chr2:3073844 4.48E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80291 PF00069 Pkinase 6.90E-38 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02066 K08286 - csv:101209748 1101.66