Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02105 ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCGAAGAGCAAACCCTTATCAACCCCTTCCTCGTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCAATGATCCTAGAGTCTGAAAATGTGGAAACCTGGGAGACAGCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATTGGTAACAAATTTGCCTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAAGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAATGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACATCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTTACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGGTACCAAATCTCAAACACCCCGTTCCACAAAATGAGAGGCCACCATTACCGGCGAGTTGTCAGCCGGCACTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGATGAGTGTGTGAAAGAGGGTCTTCCCCTTGCACACCATAGGAGATTGGTAAACCGAAACGCCATTATCGAACGCTTGAAAGCTTGCGCTTCAACCAGTTCTTCAATCCCTGTACATGCCTAA 1152 46.18 MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETAKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKVPNLKHPVPQNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35335976 35338547 - ClCG01G021570.1 Cla01g02105 265694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02105 383 SUPERFAMILY Protein kinase-like (PK-like) 52 337 IPR011009 -
Cla01g02105 383 MobiDBLite consensus disorder prediction 13 32 - -
Cla01g02105 383 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cla01g02105 383 SMART serkin_6 76 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02105 383 CDD STKc_MAP3K-like 83 337 - -
Cla01g02105 383 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02105 383 Gene3D Transferase(Phosphotransferase) domain 1 159 364 - -
Cla01g02105 383 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 371 - -
Cla01g02105 383 MobiDBLite consensus disorder prediction 14 31 - -
Cla01g02105 383 Pfam Protein tyrosine and serine/threonine kinase 78 339 IPR001245 GO:0004672|GO:0006468
Cla01g02105 383 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cla01g02105 383 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Cla01g02105 383 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Cla01g02105 383 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Cla01g02105 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cla01g02105 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02105 Cla-Chr1:35335976 Cla01g02251 Cla-Chr1:36458051 5.53E-109 dispersed
Cla10g00044 Cla-Chr10:506616 Cla01g02105 Cla-Chr1:35335976 6.09E-61 dispersed
Cla10g01559 Cla-Chr10:30987786 Cla01g02105 Cla-Chr1:35335976 7.11E-39 dispersed
Cla01g02105 Cla-Chr1:35335976 Cla01g01294 Cla-Chr1:26249281 9.87E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80292 PF07714 PK_Tyr_Ser-Thr 6.20E-65 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02105 - - cmo:103484647 725.702