Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02117 | ATGCTCTCTCACTGCCTTCCATTCCCATCGCCACTGCTAAGTTTTAGCTTACTGCCTTGGTTTTCCATCTGTGTTGCCGGTCCAAGTGGGAGTTCTTCGGGAGGTATGATGAATTTTGGAAATCAAAATAATAATAATAATAATAATAATAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTGATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACGCCGCTGGCAATTTATTTCATTTTTATGCTATCAAGTTTAATATGTGTGTAGTAAGAGTTCATTTTCTTCTTCCTCGAAAATGTGATGCCTTCAATATTGTTTTGGTTATTGAAATAAGTTGTGAGAATTTGAGTGATATGTGCTCTTATAAGAAGAGTTACTCAATGAGACCACCACGACAACGACATAGCTACATCTGTTGGGCTAGACATAAAGATTTACTCATCCAAGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCAGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAGTGGCCTTACCCTTCAGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA | 1356 | 41.22 | MLSHCLPFPSPLLSFSLLPWFSICVAGPSGSSSGGMMNFGNQNNNNNNNNSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAGNLFHFYAIKFNMCVVRVHFLLPRKCDAFNIVLVIEISCENLSDMCSYKKSYSMRPPRQRHSYICWARHKDLLIQACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL | 451 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35437912 | 35446576 | + | ClCG01G021690.2 | Cla01g02117 | 265706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02117 | 451 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 305 | 440 | - | - | |
Cla01g02117 | 451 | Gene3D | - | 358 | 420 | - | - | |
Cla01g02117 | 451 | PANTHER | - | 27 | 228 | - | - | |
Cla01g02117 | 451 | Pfam | Homeobox KN domain | 373 | 412 | IPR008422 | GO:0003677|GO:0006355 | |
Cla01g02117 | 451 | SUPERFAMILY | Homeodomain-like | 355 | 429 | IPR009057 | - | |
Cla01g02117 | 451 | ProSiteProfiles | ELK domain profile. | 333 | 353 | IPR005539 | GO:0003677 | |
Cla01g02117 | 451 | ProSiteProfiles | 'Homeobox' domain profile. | 353 | 416 | IPR001356 | GO:0003677 | |
Cla01g02117 | 451 | Pfam | ELK domain | 333 | 354 | IPR005539 | GO:0003677 | |
Cla01g02117 | 451 | SMART | KNOX2_2 | 170 | 221 | IPR005541 | GO:0003677|GO:0005634 | |
Cla01g02117 | 451 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 27 | 228 | - | - | |
Cla01g02117 | 451 | ProSitePatterns | 'Homeobox' domain signature. | 391 | 414 | IPR017970 | GO:0000981|GO:0006355 | |
Cla01g02117 | 451 | CDD | homeodomain | 365 | 417 | IPR001356 | GO:0003677 | |
Cla01g02117 | 451 | PANTHER | - | 305 | 440 | - | - | |
Cla01g02117 | 451 | SMART | ELK_2 | 333 | 354 | IPR005539 | GO:0003677 | |
Cla01g02117 | 451 | Pfam | KNOX2 domain | 173 | 219 | IPR005541 | GO:0003677|GO:0005634 | |
Cla01g02117 | 451 | Pfam | KNOX1 domain | 123 | 161 | IPR005540 | GO:0003677|GO:0005634 | |
Cla01g02117 | 451 | SMART | HOX_1 | 355 | 420 | IPR001356 | GO:0003677 | |
Cla01g02117 | 451 | SMART | KNOX1_2 | 121 | 165 | IPR005540 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02117 | Cla-Chr1:35437912 | Cla05g02558 | Cla-Chr5:36873530 | 8.52E-64 | dispersed | |
Cla01g02117 | Cla-Chr1:35437912 | Cla02g00217 | Cla-Chr2:2237529 | 5.68E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60502 | PF03791 | KNOX2 | 7.80E-20 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02117 | - | - | csv:101211566 | 311.227 |