Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02117 ATGCTCTCTCACTGCCTTCCATTCCCATCGCCACTGCTAAGTTTTAGCTTACTGCCTTGGTTTTCCATCTGTGTTGCCGGTCCAAGTGGGAGTTCTTCGGGAGGTATGATGAATTTTGGAAATCAAAATAATAATAATAATAATAATAATAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTGATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACGCCGCTGGCAATTTATTTCATTTTTATGCTATCAAGTTTAATATGTGTGTAGTAAGAGTTCATTTTCTTCTTCCTCGAAAATGTGATGCCTTCAATATTGTTTTGGTTATTGAAATAAGTTGTGAGAATTTGAGTGATATGTGCTCTTATAAGAAGAGTTACTCAATGAGACCACCACGACAACGACATAGCTACATCTGTTGGGCTAGACATAAAGATTTACTCATCCAAGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCAGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAGTGGCCTTACCCTTCAGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA 1356 41.22 MLSHCLPFPSPLLSFSLLPWFSICVAGPSGSSSGGMMNFGNQNNNNNNNNSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAGNLFHFYAIKFNMCVVRVHFLLPRKCDAFNIVLVIEISCENLSDMCSYKKSYSMRPPRQRHSYICWARHKDLLIQACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35437912 35446576 + ClCG01G021690.2 Cla01g02117 265706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02117 451 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 305 440 - -
Cla01g02117 451 Gene3D - 358 420 - -
Cla01g02117 451 PANTHER - 27 228 - -
Cla01g02117 451 Pfam Homeobox KN domain 373 412 IPR008422 GO:0003677|GO:0006355
Cla01g02117 451 SUPERFAMILY Homeodomain-like 355 429 IPR009057 -
Cla01g02117 451 ProSiteProfiles ELK domain profile. 333 353 IPR005539 GO:0003677
Cla01g02117 451 ProSiteProfiles 'Homeobox' domain profile. 353 416 IPR001356 GO:0003677
Cla01g02117 451 Pfam ELK domain 333 354 IPR005539 GO:0003677
Cla01g02117 451 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Cla01g02117 451 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 228 - -
Cla01g02117 451 ProSitePatterns 'Homeobox' domain signature. 391 414 IPR017970 GO:0000981|GO:0006355
Cla01g02117 451 CDD homeodomain 365 417 IPR001356 GO:0003677
Cla01g02117 451 PANTHER - 305 440 - -
Cla01g02117 451 SMART ELK_2 333 354 IPR005539 GO:0003677
Cla01g02117 451 Pfam KNOX2 domain 173 219 IPR005541 GO:0003677|GO:0005634
Cla01g02117 451 Pfam KNOX1 domain 123 161 IPR005540 GO:0003677|GO:0005634
Cla01g02117 451 SMART HOX_1 355 420 IPR001356 GO:0003677
Cla01g02117 451 SMART KNOX1_2 121 165 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02117 Cla-Chr1:35437912 Cla05g02558 Cla-Chr5:36873530 8.52E-64 dispersed
Cla01g02117 Cla-Chr1:35437912 Cla02g00217 Cla-Chr2:2237529 5.68E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60502 PF03791 KNOX2 7.80E-20 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02117 - - csv:101211566 311.227