Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02123 ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGCCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTTATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCAAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTGGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCGCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGCTAAACCTTGTTGA 1134 47.88 MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIDACWRSNPNWAANRQALADCAVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGWGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLAKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35485956 35488977 + ClCG01G021750.1 Cla01g02123 265712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02123 377 Gene3D - 29 370 IPR012334 -
Cla01g02123 377 PANTHER PECTATE LYASE 18-RELATED 16 375 IPR045032 GO:0030570
Cla01g02123 377 PANTHER PECTATE LYASE 16 375 - -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Cla01g02123 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Cla01g02123 377 SMART amb_all 103 300 IPR002022 -
Cla01g02123 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
Cla01g02123 377 Pfam Pectate lyase 110 294 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02123 Cla-Chr1:35485956 Cla03g00314 Cla-Chr3:3763924 2.49E-150 dispersed
Cla04g00845 Cla-Chr4:23469011 Cla01g02123 Cla-Chr1:35485956 3.98E-50 dispersed
Cla04g01222 Cla-Chr4:27334439 Cla01g02123 Cla-Chr1:35485956 1.76E-106 dispersed
Cla01g02123 Cla-Chr1:35485956 Cla03g00423 Cla-Chr3:4856036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02123 K01728 - csv:101210816 710.294