Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02123 | ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGCCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTTATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCAAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTGGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCGCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGCTAAACCTTGTTGA | 1134 | 47.88 | MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIDACWRSNPNWAANRQALADCAVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGWGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLAKPC | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35485956 | 35488977 | + | ClCG01G021750.1 | Cla01g02123 | 265712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02123 | 377 | Gene3D | - | 29 | 370 | IPR012334 | - | |
Cla01g02123 | 377 | PANTHER | PECTATE LYASE 18-RELATED | 16 | 375 | IPR045032 | GO:0030570 | |
Cla01g02123 | 377 | PANTHER | PECTATE LYASE | 16 | 375 | - | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 318 | 342 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 175 | 196 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 348 | 371 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 52 | 69 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 75 | 100 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 255 | 274 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 277 | 296 | IPR018082 | - | |
Cla01g02123 | 377 | PRINTS | Pollen allergen Amb family signature | 111 | 127 | IPR018082 | - | |
Cla01g02123 | 377 | SMART | amb_all | 103 | 300 | IPR002022 | - | |
Cla01g02123 | 377 | SUPERFAMILY | Pectin lyase-like | 30 | 368 | IPR011050 | - | |
Cla01g02123 | 377 | Pfam | Pectate lyase | 110 | 294 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02123 | Cla-Chr1:35485956 | Cla03g00314 | Cla-Chr3:3763924 | 2.49E-150 | dispersed | |
Cla04g00845 | Cla-Chr4:23469011 | Cla01g02123 | Cla-Chr1:35485956 | 3.98E-50 | dispersed | |
Cla04g01222 | Cla-Chr4:27334439 | Cla01g02123 | Cla-Chr1:35485956 | 1.76E-106 | dispersed | |
Cla01g02123 | Cla-Chr1:35485956 | Cla03g00423 | Cla-Chr3:4856036 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02123 | K01728 | - | csv:101210816 | 710.294 |