Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02125 | ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTAGCCGACGAGAATCGGCTGCCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCCACTAATATTATCGCCACCACCGCCATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAACAAAATCAGGCTTCCGAACCCGCTCATGAAAGAGAGATTGGGGAGAAGAAATCGACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACAACACGGGTGAAAGCGATGAACTATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACCGCCTCCAAAAAAAGAGATCACGCGGAAATCACGGCTCCTTCCGATCACGAAAATTCCAAAAGACCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCTAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCCGTGGGTTGCCCAGTTCGTAAACAAGTCCAACGTTGTGCTGAAGATAGGAGTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCGCCGGCAGCGATGGCCATGGCGTCAACTACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGCCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAATAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGGGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAGCAATACAAACACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA | 1872 | 48.08 | MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLADENRLPVNEVDFFSDKKRVVDDREDQDSKPSTNIIATTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNNTGESDELLCNSSSDERTRSGSPLNNNNTTETASKKRDHAEITAPSDHENSKRPNPREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAAVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35508246 | 35510616 | + | ClCG01G021770.1 | Cla01g02125 | 265714 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02125 | 623 | Coils | Coil | 144 | 178 | - | - | |
Cla01g02125 | 623 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 47 | 597 | IPR044810 | GO:0003700 | |
Cla01g02125 | 623 | SUPERFAMILY | WRKY DNA-binding domain | 341 | 409 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02125 | 623 | SMART | WRKY_cls | 348 | 408 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 202 | 223 | - | - | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 533 | 554 | - | - | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 191 | 330 | - | - | |
Cla01g02125 | 623 | Gene3D | WRKY domain | 333 | 410 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02125 | 623 | ProSiteProfiles | WRKY domain profile. | 343 | 409 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cla01g02125 | 623 | Pfam | WRKY DNA -binding domain | 350 | 407 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 533 | 550 | - | - | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 231 | 271 | - | - | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 272 | 300 | - | - | |
Cla01g02125 | 623 | MobiDBLite | consensus disorder prediction | 587 | 623 | - | - | |
Cla01g02125 | 623 | PANTHER | WRKY TRANSCRIPTION FACTOR 6 | 47 | 597 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02125 | Cla-Chr1:35508246 | Cla05g01057 | Cla-Chr5:10905271 | 3.30E-48 | dispersed | |
Cla01g02125 | Cla-Chr1:35508246 | Cla02g00199 | Cla-Chr2:2110886 | 2.20E-165 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60503 | PF03106 | WRKY | 3.60E-24 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02125 | - | - | csv:101222214 | 954.896 |