Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02136 ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTAGAAACACACCAAAAGCTACTGTTGAAAGCGAACCTCATAATTCCGGTTGTGACTTTTGGTCGAACACATTATACGCAATGGGCCTTGAAAATCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGCAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGCGCGCAGTGGGCGTGGATTGGGGAAACTCCCATTGGAGTAGCGTAAAAATGCGAACAAATTGGGGAGAGAAAGGAAATGTGGGCGTCAGAGTTGGTGCTCGGCCTCTATGGGCAAAGAGGGGTTCGATTTGGAGAATATTCTCTGAAACTGCGCAATGGCAGAAGCAGGGTAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTGGACTTAGCAATTTCTGCGCAAATCAGAGAAGTTATATTAGACAATGGATTGTTGAAGGTGACGATGTCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAATTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTTTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTGGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACACTGATTTATATCCAAGAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGACTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGCGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 2337 43.22 MGKKKLSLQNQGSHVRNTPKATVESEPHNSGCDFWSNTLYAMGLENLDATVCSTRSSCLANSMSEFPRTVTRRSGMRAVGVDWGNSHWSSVKMRTNWGEKGNVGVRVGARPLWAKRGSIWRIFSETAQWQKQGNRSGILSKGIMAELDLAISAQIREVILDNGLLKVTMSNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSIQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYTDLYPRNDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESTLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35566919 35573261 + ClCG01G021890.1 Cla01g02136 265725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02136 778 Gene3D - 582 772 - -
Cla01g02136 778 Pfam Polysaccharide lyase family 4, domain III 584 772 IPR029411 -
Cla01g02136 778 Pfam Polysaccharide lyase family 4, domain II 504 570 IPR029413 -
Cla01g02136 778 Gene3D - 150 446 IPR014718 GO:0030246
Cla01g02136 778 SUPERFAMILY Galactose-binding domain-like 581 773 IPR008979 -
Cla01g02136 778 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 161 776 - -
Cla01g02136 778 MobiDBLite consensus disorder prediction 1 28 - -
Cla01g02136 778 Pfam Rhamnogalacturonate lyase family 156 343 IPR010325 -
Cla01g02136 778 Gene3D - 472 574 - -
Cla01g02136 778 SUPERFAMILY Starch-binding domain-like 470 573 IPR013784 GO:0030246
Cla01g02136 778 SUPERFAMILY Galactose mutarotase-like 158 437 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cla01g02136 778 CDD RGL4_M 475 572 IPR029413 -
Cla01g02136 778 CDD RGL4_C 586 773 - -
Cla01g02136 778 CDD RGL4_N 149 442 - -
Cla01g02136 778 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 161 776 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01783 Cla-Chr1:32779400 Cla01g02136 Cla-Chr1:35566919 0 dispersed
Cla01g02136 Cla-Chr1:35566919 Cla08g01151 Cla-Chr8:24302411 0 dispersed
Cla01g02135 Cla-Chr1:35565858 Cla01g02136 Cla-Chr1:35566919 5.48E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02136 K18195 - csv:101220336 1214.13