Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02136 | ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTAGAAACACACCAAAAGCTACTGTTGAAAGCGAACCTCATAATTCCGGTTGTGACTTTTGGTCGAACACATTATACGCAATGGGCCTTGAAAATCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGCAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGCGCGCAGTGGGCGTGGATTGGGGAAACTCCCATTGGAGTAGCGTAAAAATGCGAACAAATTGGGGAGAGAAAGGAAATGTGGGCGTCAGAGTTGGTGCTCGGCCTCTATGGGCAAAGAGGGGTTCGATTTGGAGAATATTCTCTGAAACTGCGCAATGGCAGAAGCAGGGTAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTGGACTTAGCAATTTCTGCGCAAATCAGAGAAGTTATATTAGACAATGGATTGTTGAAGGTGACGATGTCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAATTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTTTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTGGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACACTGATTTATATCCAAGAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGACTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGCGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA | 2337 | 43.22 | MGKKKLSLQNQGSHVRNTPKATVESEPHNSGCDFWSNTLYAMGLENLDATVCSTRSSCLANSMSEFPRTVTRRSGMRAVGVDWGNSHWSSVKMRTNWGEKGNVGVRVGARPLWAKRGSIWRIFSETAQWQKQGNRSGILSKGIMAELDLAISAQIREVILDNGLLKVTMSNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSIQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYTDLYPRNDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESTLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP | 778 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35566919 | 35573261 | + | ClCG01G021890.1 | Cla01g02136 | 265725 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02136 | 778 | Gene3D | - | 582 | 772 | - | - | |
Cla01g02136 | 778 | Pfam | Polysaccharide lyase family 4, domain III | 584 | 772 | IPR029411 | - | |
Cla01g02136 | 778 | Pfam | Polysaccharide lyase family 4, domain II | 504 | 570 | IPR029413 | - | |
Cla01g02136 | 778 | Gene3D | - | 150 | 446 | IPR014718 | GO:0030246 | |
Cla01g02136 | 778 | SUPERFAMILY | Galactose-binding domain-like | 581 | 773 | IPR008979 | - | |
Cla01g02136 | 778 | PANTHER | POLYSACCHARIDE LYASE FAMILY 4 PROTEIN | 161 | 776 | - | - | |
Cla01g02136 | 778 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cla01g02136 | 778 | Pfam | Rhamnogalacturonate lyase family | 156 | 343 | IPR010325 | - | |
Cla01g02136 | 778 | Gene3D | - | 472 | 574 | - | - | |
Cla01g02136 | 778 | SUPERFAMILY | Starch-binding domain-like | 470 | 573 | IPR013784 | GO:0030246 | |
Cla01g02136 | 778 | SUPERFAMILY | Galactose mutarotase-like | 158 | 437 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cla01g02136 | 778 | CDD | RGL4_M | 475 | 572 | IPR029413 | - | |
Cla01g02136 | 778 | CDD | RGL4_C | 586 | 773 | - | - | |
Cla01g02136 | 778 | CDD | RGL4_N | 149 | 442 | - | - | |
Cla01g02136 | 778 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 161 | 776 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01783 | Cla-Chr1:32779400 | Cla01g02136 | Cla-Chr1:35566919 | 0 | dispersed | |
Cla01g02136 | Cla-Chr1:35566919 | Cla08g01151 | Cla-Chr8:24302411 | 0 | dispersed | |
Cla01g02135 | Cla-Chr1:35565858 | Cla01g02136 | Cla-Chr1:35566919 | 5.48E-71 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02136 | K18195 | - | csv:101220336 | 1214.13 |