Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02144 ATGGCTTGCTCAAACTTCACAATGTGGGTGTCCTCAAAACCGTCTTCATCCGATTCCTCCGCTCTTTCTTTTGGGCCTTTTAATCCTCTTCAACTTCCTTCGCAAGGCTCTGCCTCGCGATCCTCATCTGTTACTCCGATTCAGTGTGGCCTCCGTGAGCTTCGAGAACGGATTGATTCAGTGAAGAACACCCAGAAAATTACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCACAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAGTCTCTAGTTGAAGTTCTTTACAATATCAACGAGCAGCTCCAAACCGAAGATATAGATGTTCCTCTCACAAAAGTCCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTTTGCGGCAGTTTTAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAGGGGAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCAACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTATTAGCGAGGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCAGACCCTGTGATCCACACTCTGCTTCCATTGTCACCTAAAGGAGAGATTTGTGATATTAATGGTGTTTGTGTTGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCAGTGAGGACAAAAACCTCAGATTTCTCCCCAATTTTACAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTGTATTTGAACAGTCAAATTTTGAGGTCATTGCAGGAATCATTAGCTAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACACTCTCTATTGTTTACAACAGACAGCGGCAAGCAAAAATCACCGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTAACTTGA 1116 44.27 MACSNFTMWVSSKPSSSDSSALSFGPFNPLQLPSQGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35626557 35627672 - ClCG01G021980.2 Cla01g02144 265733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02144 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Cla01g02144 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 370 - -
Cla01g02144 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 Coils Coil 51 71 - -
Cla01g02144 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Cla01g02144 371 Gene3D - 118 241 - -
Cla01g02144 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla01g02144 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Cla01g02144 371 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 50 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02144 Cla-Chr1:35626557 Cla10g00504 Cla-Chr10:6687108 1.40E-150 dispersed
Cla01g02144 Cla-Chr1:35626557 Cla03g00441 Cla-Chr3:5010091 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02144 K02115 - csv:101218747 674.855