Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02157 ATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGAGGAGTTGGAAAATATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACACGAAAACGCAATTTTGAAGGCAGAAAATGAGAAGCTTCTTGCTGAGAACATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCCACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTACGGAGCGGCGGACTTTTTGCGGTCGATATCGAGGCCTTCAGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGAATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGCTGGTGGATATTTTCATGGATGCTACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCCAGAGCATCCACTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTGTGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGCATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACGTCTTTTTGGATCCCTGTTCCACCTAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACCCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCGACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACAGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2157 51.83 MFDPDMFDTHHHMLEELENMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLLAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFLRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35717070 35723703 - ClCG01G022120.2 Cla01g02157 265746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02157 718 Pfam START domain 236 456 IPR002913 GO:0008289
Cla01g02157 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289
Cla01g02157 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677
Cla01g02157 718 SUPERFAMILY Bet v1-like 228 457 - -
Cla01g02157 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 715 IPR042160 -
Cla01g02157 718 Gene3D - 285 457 IPR023393 -
Cla01g02157 718 Coils Coil 98 130 - -
Cla01g02157 718 SMART HOX_1 45 108 IPR001356 GO:0003677
Cla01g02157 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 14 715 - -
Cla01g02157 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Cla01g02157 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Cla01g02157 718 Gene3D - 36 121 - -
Cla01g02157 718 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
Cla01g02157 718 SMART START_1 234 456 IPR002913 GO:0008289
Cla01g02157 718 SUPERFAMILY Bet v1-like 478 710 - -
Cla01g02157 718 CDD homeodomain 46 105 IPR001356 GO:0003677
Cla01g02157 718 MobiDBLite consensus disorder prediction 29 54 - -
Cla01g02157 718 CDD START_ArGLABRA2_like 229 455 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02157 Cla03g00460 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02157 Cla-Chr1:35717070 Cla05g00862 Cla-Chr5:8530092 0 dispersed
Cla01g02453 Cla-Chr1:38229879 Cla01g02157 Cla-Chr1:35717070 2.73E-07 dispersed
Cla01g02157 Cla-Chr1:35717070 Cla02g00180 Cla-Chr2:1839253 0 wgd
Cla01g02157 Cla-Chr1:35717070 Cla02g00833 Cla-Chr2:11320437 0 wgd
Cla01g02157 Cla-Chr1:35717070 Cla03g00460 Cla-Chr3:5175541 0 wgd
Cla01g02157 Cla-Chr1:35717070 Cla05g01515 Cla-Chr5:24676418 1.46E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60505 PF01852 START 8.10E-47 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02157 K09338 - csv:101209093 1359.74