Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02159 ATGGCTACCCATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAAAACCTTCCCAACAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACCCATCTAAAAATGATCTACCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACACAATCGAGAAAGCCATAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAGAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCTATTTGGGGATCGGAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGAAAATGCGTATCCGAGTTGGTTGAAGAAAGGAGATCGGACATTGTTGGGGGTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTGCCAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTAGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAATTGAGCCCCGACGGCCGATGAGCAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATCGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCAGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAACCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.32 MATHQPLLLQPPKTPRSKTFPTILCLAALLCSAIFITNKFIKSNPSKNDLPFLHNICHKAYNPSSCIQMAASESPFPQEIKTTNGAHFLHSFLRKSIPKVINTIEKAIDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNRTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWGSEIGNLGELGKRENAYPSWLKKGDRTLLGVSGREMQANIVVAKDGSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITNPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35741531 35743483 - ClCG01G022140.1 Cla01g02159 265748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02159 555 CDD PMEI-like_4 57 204 - -
Cla01g02159 555 PANTHER PECTINESTERASE 20 554 - -
Cla01g02159 555 Pfam Plant invertase/pectin methylesterase inhibitor 52 179 IPR006501 GO:0004857
Cla01g02159 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857
Cla01g02159 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cla01g02159 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Cla01g02159 555 SMART PMEI_2 48 200 IPR006501 GO:0004857
Cla01g02159 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Cla01g02159 555 PANTHER PECTINESTERASE 20 554 - -
Cla01g02159 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Cla01g02159 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cla01g02159 555 Gene3D - 238 555 IPR012334 -
Cla01g02159 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02159 Cla-Chr1:35741531 Cla09g00512 Cla-Chr9:4846710 3.66E-153 dispersed
Cla02g00063 Cla-Chr2:625842 Cla01g02159 Cla-Chr1:35741531 1.08E-101 dispersed
Cla05g00252 Cla-Chr5:2297068 Cla01g02159 Cla-Chr1:35741531 5.19E-133 dispersed
Cla09g00511 Cla-Chr9:4824313 Cla01g02159 Cla-Chr1:35741531 6.00E-129 dispersed
Cla01g02159 Cla-Chr1:35741531 Cla09g00131 Cla-Chr9:1312134 1.48E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02159 K01051 - csv:101216377 971.074