Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02174 ATGATTCAATTTGATTTTGATAGCATTAAAATCGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAGGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACGACTAATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGAGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATTATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATGTAAAGCGTGGACAATTCTCAATAAAATCAGATGTTTTTAGTTTTGGTGTCTTGGTTCTTGAGATTTTGAGTGGTCAAAGAAATAATAATTTTTACAATGGAGAACACTCCAAAAATCTCTTAAGCTTTGCATGGACAAATTGGAGGGCAGGAACAACTACAAATGTCATAGATTCCAGCCTTAGTATTGGTTCAAGGATCGAGATGATAAGATGCATTCATATTGGACTATTGTGTGTTCAAGAAAGTATAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTTTCACTCTTCCTATACCCTCTAAACCAGGATTCTTCCTGCATAGTCTTACCAACAAATCGAACAAACTCTTAAAGTTAGATGGAAATAGTTGTGAAAGTCCGTCTATTCAACTTTCGAAGAATGACATTTCAATTACAGAGATCCATCCACGTTAG 1026 36.55 MIQFDFDSIKIATNDFASENKLGQGGFGAVYKGKLPNGRLIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTEMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYVKRGQFSIKSDVFSFGVLVLEILSGQRNNNFYNGEHSKNLLSFAWTNWRAGTTTNVIDSSLSIGSRIEMIRCIHIGLLCVQESITNRPTMTSVVMMLSSSSFTLPIPSKPGFFLHSLTNKSNKLLKLDGNSCESPSIQLSKNDISITEIHPR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35825456 35833318 + ClCG01G022239.1 Cla01g02174 265763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02174 341 ProSiteProfiles Protein kinase domain profile. 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02174 341 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 3 311 - -
Cla01g02174 341 Gene3D Transferase(Phosphotransferase) domain 1 92 292 - -
Cla01g02174 341 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 311 - -
Cla01g02174 341 SUPERFAMILY Protein kinase-like (PK-like) 4 305 IPR011009 -
Cla01g02174 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cla01g02174 341 PIRSF ILK 6 293 - -
Cla01g02174 341 SMART serkin_6 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02174 341 CDD STKc_IRAK 22 280 - -
Cla01g02174 341 ProSitePatterns Protein kinases ATP-binding region signature. 22 44 IPR017441 GO:0005524
Cla01g02174 341 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Cla01g02174 341 Pfam Protein tyrosine and serine/threonine kinase 19 284 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02174 Cla-Chr1:35825456 Cla03g00479 Cla-Chr3:5329503 5.44E-149 dispersed
Cla01g02177 Cla-Chr1:35842409 Cla01g02174 Cla-Chr1:35825456 3.42E-81 dispersed
Cla01g02174 Cla-Chr1:35825456 Cla01g02176 Cla-Chr1:35837378 1.45E-123 proximal
Cla01g02174 Cla-Chr1:35825456 Cla03g00475 Cla-Chr3:5298327 3.44E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80295 PF07714 PK_Tyr_Ser-Thr 7.90E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02174 - - csv:105434447 542.347