Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02176 ATGGATGACCATGCAGATCTTGGGAAGCGGATACAATTAGATTGGGAAAAACGATATAAAATCATAAATGGCACTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATGAAGAAATGAATCCAAAGATCGCCGATTTTGGTTTAGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGGATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATATAGTACATGGACAATTTTCGGTAAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTTCTTGAAATTGTGAGTGGCCAAAAAAACAATTGTTTTCGCAATGGAGAAAATATTGGAGATCTTACCAGCTTTACTTGGAATAATTGGAGGGCTAGAGCAACCACAAATGTCATAGCTTCAACACTTGGTGTTGGCTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGAAAATGTAGCAAACCGACCAACAATGGCTTCGGTGGTTATGATGTTAAGTAGTTCTTCTTTCACTCTCCCTATACCCTCTAAACCTGCATTCTTCATGCATAGCATCACCAATGGATCCAACACAATGTTAGCATCAAATGAGACTAATCATTCTAAAAGCACATCTCTTCAACATTCAGAAAGTGCCGACGTTTCAATTACAGAACTTCACCCTCGTTAA 741 38.46 MDDHADLGKRIQLDWEKRYKIINGTARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYIVHGQFSVKSDVFSFGVLVLEIVSGQKNNCFRNGENIGDLTSFTWNNWRARATTNVIASTLGVGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSFTLPIPSKPAFFMHSITNGSNTMLASNETNHSKSTSLQHSESADVSITELHPR 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35837378 35838361 + ClCG01G022243.1 Cla01g02176 265765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02176 246 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 6 231 - -
Cla01g02176 246 Gene3D Transferase(Phosphotransferase) domain 1 2 195 - -
Cla01g02176 246 ProSiteProfiles Protein kinase domain profile. 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02176 246 SMART serkin_6 3 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02176 246 MobiDBLite consensus disorder prediction 216 238 - -
Cla01g02176 246 Pfam Protein kinase domain 11 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02176 246 SUPERFAMILY Protein kinase-like (PK-like) 10 228 IPR011009 -
Cla01g02176 246 MobiDBLite consensus disorder prediction 216 246 - -
Cla01g02176 246 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 231 - -
Cla01g02176 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 40 52 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02176 Cla-Chr1:35837378 Cla01g01985 Cla-Chr1:34494682 1.24E-116 dispersed
Cla01g02174 Cla-Chr1:35825456 Cla01g02176 Cla-Chr1:35837378 1.45E-123 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80296 PF00069 Pkinase 1.10E-28 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02176 - - csv:101207636 406.371