Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02177 ATGATTCTGAGATGGAGAAACAGAAAGCAGAAAAGACCATTAAGAAAATTTGAAAGTGTTGCTCTTGGAGATGCCAGTGATGACATTAGCAGTGTGAACACAATTCAATTTGATTTTGATGTCATTAAAGATGCAACTAATGACTTCTCAAGTGAAAACAAGCTAGGACAGGGTGGGTTTGGAGTTGTTTATCGGGGTAAGCTACCTAATGGACAACATATTGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACCAAATGGGCAGCCTTGACCACTTCATATTTGATTTTGGGGAGCAGACACAATTAGGTTGGGAAACACGATACAAAATCATAAATGGCATTGCGCGAGGACTTCTTTATCTTCATGAAGATTCTCGCCTTGGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGGAGAAATGAATCCAAAAATTGCTGACTTTGGTATGGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTAG 582 38.32 MILRWRNRKQKRPLRKFESVALGDASDDISSVNTIQFDFDVIKDATNDFSSENKLGQGGFGVVYRGKLPNGQHIAVKRLAHNSQQGDVEFKNEEAKDFSYMSLYQMGSLDHFIFDFGEQTQLGWETRYKIINGIARGLLYLHEDSRLGIIHRDLKASNILLDGEMNPKIADFGMARLFEVDETQGNTSRIVGT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35842409 35843345 - ClCG01G022247.1 Cla01g02177 265766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02177 193 Pfam Protein kinase domain 101 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02177 193 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 93 - -
Cla01g02177 193 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 108 193 - -
Cla01g02177 193 Gene3D Phosphorylase Kinase; domain 1 15 101 - -
Cla01g02177 193 ProSiteProfiles Protein kinase domain profile. 49 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02177 193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Cla01g02177 193 SUPERFAMILY Protein kinase-like (PK-like) 26 193 IPR011009 -
Cla01g02177 193 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 108 193 - -
Cla01g02177 193 Gene3D Transferase(Phosphotransferase) domain 1 105 193 - -
Cla01g02177 193 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Cla01g02177 193 SMART serkin_6 49 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02177 193 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 20 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02177 Cla-Chr1:35842409 Cla01g02174 Cla-Chr1:35825456 3.42E-81 dispersed
Cla01g02177 Cla-Chr1:35842409 Cla01g02180 Cla-Chr1:35859856 2.04E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80297 PF00069 Pkinase 3.50E-15 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02177 - - csv:101207636 290.812