Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02181 ATGACTTATCAAATCATTCCTGATTCCTTGATGGGTTTTCTCGAGTTTGCAGGAAAGTTTCTGAAGCTAGGATCCGAATTGATAATGAGATCTAGGACAGAGCTGGAGGAAGGTCGAAGAATTTGTGCCACCCTGCCAGTCTTTGTCAACCATGTCTGCATGTATGAAGTAGGGAACTTCATCAGCAACAGCACCTATAAGACCAACCTCGATCATGTACTCTCCTCCATTGCCACTGCTAAAGATACTGGCTACGGCTTTTACAACTTTTCGTATGGTGAAAGCTCAGAATCAGCCAATGCTATTGGGCTCTGCCGCGGAGATACGAAGCCTGATATTTGTCGAAGCTGCCTTAATAACTCTATATATTTTCTCACACAGCTATGTCCTGAGCAGAAAGAAGCAATTGGGTGGTATGATAACTGTATGTTACGCTATTCAAGTCGTCCCATATTTGGTGCAATGGAAAATGTTCCCATGTTCTTCGCGTGGTTGACAAAGGACACCATACCACAGGAAGATCTGTTCAGGCAGAACCTGTGGACATTGCTGGATGGCTTGAAAGATAATGCTTCTTCTGGTGGTTCTTTAAGGAAGTATGCAGCTGGATCTATATTTGGAGAAACGTTTGGCAGGATATATGCACTTCTGCAGTGCACACCTGATTTGTCTCGACTACAATGTGATGCATGCTTAAATTCAGCGTTTCAAAAAATTCCACCATGTTGTAGTTTAACTTGGAGATATTTTTCACCCAGCTGTAATGTTAGATATCAGATGTCCCTTTTCTTTCAGCCTTCTGCTGATTTGCCACCACCAATGCCGCAAATTTTTGTTCCTTCTAGCAATACCACGTTTTCAGAAGCAAAGAAGAACACCATACGCACTACCATTTTAATAGTTCTCCCATTTGTGGCTGTTTTGGTTTTAGCCGTCAGCATCTACACCTTTTTGAGATTCAGCAAGTTGAGGAAAAGACTTGAGACTAGTGATGATGAAATTATCCCCACTTCCTTGCAATATGATTTCAAGTTGATTAGAGAAGCAACAGATGACTTCTCTATTTCAAATAAGCTTGGACAAGGTGGATTTGGTGTTGTTTATAAGGGTAGGCTTTACAATGGACAAGAAGTGGCTGTGAAAAGGCTAGCTCAAGGTTCGCAACAGGGTGACTTGGAATTTAAAAATGAAGTTTTACTGGTTGCTAAGCTGCAACACCGGAATCTGGTTCGACTTCTTGGCTTTTGCTTTGAGAAAGACGAAAGGCTCCTCGTTTACGAGTTTTTACCCAATTCAAGCCTAGATCATTTCATATTTGGTAACCTCTTTGCACTTTGTTCTATGTTCCTAAAAGCCGGCATAAACTTATTAATTGAAAATGTAGATCCAATTCGACGTCAATATTTGGACTGGTCAAGACGTTACAGAATTATAGTTGGGATCAGTCGCGGACTCATGTATTTACACGAAGATTCTCAATTCAAAGTCATCCATCATGATCTTAAAGCTAGTAATATTTTATTAGATGGAGAACTAAATCCAAAGATCGCTGATTTTGGAATGGCAAGCGGATACATGGCCCCAGAGTATGCACTATATGGACAATTTTCAGTAAAATCAGATGTGTTCAGTTTTGGTGTAATTCTCCTGGAGATCTTTAACATGAATTTGCCAAAGCAGACATGGAAAAACTGGATGGAAGGGAATGTCACGGCCATCATAGACCCAATACTGGCTAGAACTTGCATTGATGAAATCGTGAGATGCATCCATCTAGGCTTACTGTGTGTTCAAGAAAATGTAGCTAGCAGACCGACCATGGATTCAGTTGTTGTCATGCTCAATAGCAACTCCCTCACTCTGCCTGTACCTTTGCGGGCCGGATTTTTGCTGCAGAGCAATAACTCAAACTTGCCACAGCATCTTGATGATGATTACACAGAAGGATCACAGCATAGTCTATGTGAAAGCCTTTATGTTGAACAAGAATCAGAAAACCTCCAAGTAACCATGGCATTCTACCTTCTCCCTTCTCTTCTGCTATTAATGGCCAAAGCTACTGCTCAGCCAAACTTCATCGCTCACTTCTGCTTATACAAAACTGGTAACTTCACAGCCAAAAGTACCTTCGAGGCCAATCTTGACCATGTCCTCTCCTCCATCACCACCAACAGAAAGCTCGGCTATGGCTTTTACAGATTCTCTTATGGACAAAGCTCAGACATAGCCAATGTCGTTGGTCTTTGTCGACCAGACATTATGCTCGACGCTTGTCAAACCTGCCTCAATGACTCTGTTCATCTCCTCAGAAAGCGCTGTCCTAACCAAAAAGAAGCAATTGGATGGTATGAAAATTGCTCCTTGCACTACTCAAGTGCATCCTTGTCCAACCAAATGTATATAAGTCCAATGTTCAGGTCTCGGTTGACAAAAAACGCAACGAACACAGACCAGTTCATTCAAAGGCTAAGAATCTTGTTGAATAGCCTGAAAAACAAAGCTTCTTTAGGTGGCCCTCTACACAAATATGCAGCTGGAAATATGTCAAGTTCAGAGCTGGAAACTATATATGCCCTTGTTCAATGCCTGCCTGATTTAACTCCACAACAATGTGATTATTGCTTATCTTCCATTTTCAAGAAACTCCCAATTTGTTGTAGCCAATCTGCTGGGATCTTTACCCCCAGTTGTATGGTGAATTATAAACCAACCCGCTTCTTTGACTCTGTTACTGATGATGGGCTAACTCCGTTGCGGACAGCGATTTCTACTCCCTCGTCAGCTGTTAACGAATCTCGTGCAGTAGGTATGTATGTTTCCTTTTGTTTATCTTCTCAGAGCAATGTAAATTATGGAGCTAAATCTGGTTATCGCAGGGAAAAAGAATGTGAAGACCAGAGTTCATATTGTGATCATAATGGTTTTGTCAGTAGTTTCTTGCTGGGTTTTGATAATCTGCATCTACATGTTTCTTCGATCCAGGAAGATTGA 2991 41.42 MTYQIIPDSLMGFLEFAGKFLKLGSELIMRSRTELEEGRRICATLPVFVNHVCMYEVGNFISNSTYKTNLDHVLSSIATAKDTGYGFYNFSYGESSESANAIGLCRGDTKPDICRSCLNNSIYFLTQLCPEQKEAIGWYDNCMLRYSSRPIFGAMENVPMFFAWLTKDTIPQEDLFRQNLWTLLDGLKDNASSGGSLRKYAAGSIFGETFGRIYALLQCTPDLSRLQCDACLNSAFQKIPPCCSLTWRYFSPSCNVRYQMSLFFQPSADLPPPMPQIFVPSSNTTFSEAKKNTIRTTILIVLPFVAVLVLAVSIYTFLRFSKLRKRLETSDDEIIPTSLQYDFKLIREATDDFSISNKLGQGGFGVVYKGRLYNGQEVAVKRLAQGSQQGDLEFKNEVLLVAKLQHRNLVRLLGFCFEKDERLLVYEFLPNSSLDHFIFGNLFALCSMFLKAGINLLIENVDPIRRQYLDWSRRYRIIVGISRGLMYLHEDSQFKVIHHDLKASNILLDGELNPKIADFGMASGYMAPEYALYGQFSVKSDVFSFGVILLEIFNMNLPKQTWKNWMEGNVTAIIDPILARTCIDEIVRCIHLGLLCVQENVASRPTMDSVVVMLNSNSLTLPVPLRAGFLLQSNNSNLPQHLDDDYTEGSQHSLCESLYVEQESENLQVTMAFYLLPSLLLLMAKATAQPNFIAHFCLYKTGNFTAKSTFEANLDHVLSSITTNRKLGYGFYRFSYGQSSDIANVVGLCRPDIMLDACQTCLNDSVHLLRKRCPNQKEAIGWYENCSLHYSSASLSNQMYISPMFRSRLTKNATNTDQFIQRLRILLNSLKNKASLGGPLHKYAAGNMSSSELETIYALVQCLPDLTPQQCDYCLSSIFKKLPICCSQSAGIFTPSCMVNYKPTRFFDSVTDDGLTPLRTAISTPSSAVNESRAVGMYVSFCLSSQSNVNYGAKSGYRREKECEDQSSYCDHNGFVSSFLLGFDNLHLHVSSIQED 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35869722 35875195 + ClCG01G022280.1 Cla01g02181 265770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02181 996 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 461 638 - -
Cla01g02181 996 ProSiteProfiles Protein kinase domain profile. 353 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02181 996 Pfam Protein tyrosine and serine/threonine kinase 355 613 IPR001245 GO:0004672|GO:0006468
Cla01g02181 996 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 461 638 - -
Cla01g02181 996 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 46 441 - -
Cla01g02181 996 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 668 910 - -
Cla01g02181 996 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 46 441 - -
Cla01g02181 996 SUPERFAMILY Protein kinase-like (PK-like) 343 624 IPR011009 -
Cla01g02181 996 ProSiteProfiles Gnk2-homologous domain profile. 801 906 IPR002902 -
Cla01g02181 996 Gene3D - 803 906 IPR038408 -
Cla01g02181 996 Gene3D - 159 263 IPR038408 -
Cla01g02181 996 Gene3D - 690 794 IPR038408 -
Cla01g02181 996 Gene3D - 47 150 IPR038408 -
Cla01g02181 996 SMART serkin_6 353 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02181 996 ProSiteProfiles Gnk2-homologous domain profile. 48 151 IPR002902 -
Cla01g02181 996 Gene3D Phosphorylase Kinase; domain 1 317 428 - -
Cla01g02181 996 Gene3D Transferase(Phosphotransferase) domain 1 457 621 - -
Cla01g02181 996 Pfam Salt stress response/antifungal 697 792 IPR002902 -
Cla01g02181 996 Pfam Salt stress response/antifungal 171 259 IPR002902 -
Cla01g02181 996 Pfam Salt stress response/antifungal 58 148 IPR002902 -
Cla01g02181 996 Pfam Salt stress response/antifungal 811 902 IPR002902 -
Cla01g02181 996 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 668 910 - -
Cla01g02181 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Cla01g02181 996 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Cla01g02181 996 ProSiteProfiles Gnk2-homologous domain profile. 692 795 IPR002902 -
Cla01g02181 996 ProSiteProfiles Gnk2-homologous domain profile. 157 263 IPR002902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02181 Cla03g00479 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02181 Cla-Chr1:35869722 Cla03g00475 Cla-Chr3:5298327 4.95E-40 dispersed
Cla03g00470 Cla-Chr3:5266319 Cla01g02181 Cla-Chr1:35869722 2.90E-07 dispersed
Cla01g02180 Cla-Chr1:35859856 Cla01g02181 Cla-Chr1:35869722 1.86E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80299 PF07714 PK_Tyr_Ser-Thr 3.50E-38 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02181 - - cmos:111453352 914.45