Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02188 | ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGCTGGCTTGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCTCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCAAGGATTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCTGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTCTTGGTTAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCGGATTGCAGAGCCGTAGCAGCCACGATGCTGACCAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATACCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGGAATAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCAAACTCTGGGCTGGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAACGGTTCAAAGGATGTGTGGAGATTTTGGGTCGTGTTTTGCGAAATGGAGGCCCAAGAGGAATTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGCGTGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGA | 1098 | 49.73 | MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARISKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLVNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGRVLRNGGPRGIQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNP | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35919918 | 35921015 | - | ClCG01G022350.1 | Cla01g02188 | 265777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02188 | 365 | SUPERFAMILY | RING/U-box | 3 | 72 | - | - | |
Cla01g02188 | 365 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 76 | IPR013083 | - | |
Cla01g02188 | 365 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
Cla01g02188 | 365 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
Cla01g02188 | 365 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 129 | 171 | IPR000225 | GO:0005515 | |
Cla01g02188 | 365 | SUPERFAMILY | ARM repeat | 88 | 361 | IPR016024 | - | |
Cla01g02188 | 365 | PANTHER | U BOX DOMAIN-CONTAINING | 1 | 361 | - | - | |
Cla01g02188 | 365 | SMART | arm_5 | 118 | 158 | IPR000225 | GO:0005515 | |
Cla01g02188 | 365 | SMART | arm_5 | 200 | 241 | IPR000225 | GO:0005515 | |
Cla01g02188 | 365 | SMART | arm_5 | 279 | 320 | IPR000225 | GO:0005515 | |
Cla01g02188 | 365 | SMART | arm_5 | 159 | 199 | IPR000225 | GO:0005515 | |
Cla01g02188 | 365 | CDD | RING-Ubox_PUB | 9 | 50 | IPR045210 | - | |
Cla01g02188 | 365 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 8 | 1 | 361 | - | - | |
Cla01g02188 | 365 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
Cla01g02188 | 365 | Gene3D | - | 268 | 365 | IPR011989 | - | |
Cla01g02188 | 365 | Gene3D | - | 87 | 267 | IPR011989 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02188 | Cla-Chr1:35919918 | Cla07g00605 | Cla-Chr7:11031387 | 2.05E-59 | dispersed | |
Cla01g02188 | Cla-Chr1:35919918 | Cla03g00152 | Cla-Chr3:1576062 | 1.55E-59 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02188 | - | - | csv:101213883 | 658.292 |