Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02188 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGCTGGCTTGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCTCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCAAGGATTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCTGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTCTTGGTTAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCGGATTGCAGAGCCGTAGCAGCCACGATGCTGACCAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATACCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGGAATAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCAAACTCTGGGCTGGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAACGGTTCAAAGGATGTGTGGAGATTTTGGGTCGTGTTTTGCGAAATGGAGGCCCAAGAGGAATTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGCGTGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGA 1098 49.73 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARISKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLVNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGRVLRNGGPRGIQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35919918 35921015 - ClCG01G022350.1 Cla01g02188 265777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02188 365 SUPERFAMILY RING/U-box 3 72 - -
Cla01g02188 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cla01g02188 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cla01g02188 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cla01g02188 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Cla01g02188 365 SUPERFAMILY ARM repeat 88 361 IPR016024 -
Cla01g02188 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cla01g02188 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cla01g02188 365 SMART arm_5 200 241 IPR000225 GO:0005515
Cla01g02188 365 SMART arm_5 279 320 IPR000225 GO:0005515
Cla01g02188 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cla01g02188 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cla01g02188 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Cla01g02188 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cla01g02188 365 Gene3D - 268 365 IPR011989 -
Cla01g02188 365 Gene3D - 87 267 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02188 Cla-Chr1:35919918 Cla07g00605 Cla-Chr7:11031387 2.05E-59 dispersed
Cla01g02188 Cla-Chr1:35919918 Cla03g00152 Cla-Chr3:1576062 1.55E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02188 - - csv:101213883 658.292