Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02190 ATGGGTAATAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTACTCTGTTTTTCCCCTCTGTTCTGCGACGCTGCAAATTCATTTACAAAGGGAAGAGGTTTAAGAGATGGTACTAATGAAACCCTCATATCTCTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCAATAAATTCTTCATCACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCTTAACAGAGATGGGGTTTTGACAATCGGTGACGACGGGAACTTGGTCGTTCTGGATGGCAACAACGTCTCTTTTTGGACAAGCAATATCACAGCGAATGCATTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTTACGAGCGGAGACGACTCATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCAGAGACAGATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCATTGGGATAGGCAGATTTTTTCTGGGATTCCAAATATGCGTTCTACGTCTTTGTACGGTTTCAAGATTACCCCTGAAAATGGAAATACCATTAGTGTAACTTTTCAGGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCATGTGGAATGGTAAAGAAGCACAGCAACGATTGAATGAAGCAAATCGCAAATGGGAAACGATTCGTTTACTGCCATCTAGCGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATTCCCAAAAACAAAGAACAATGGGACAGAGGGACCTGGTCAGATGGGTGTCAGAGGAAGACTCCATTGCTTCAGGAGAGAATGAACAGTAATCCGAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTACCATTTGTGAAATTGCCCGATTTCATAACTGGAGTAGTGGTGGATTCGTGTAGAGATAGATGTTCCAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGCTGTGCTACTTGGGATGGACCTTTAAAAGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTCGATAGTGAGAGCAAATTGTCAGCCGGTGTGATTGTATTGATATGTTTAGGAGCGGCAGCTGCCATAGCCATAATAGCGTTTCTGCTATGGAAATTCGGAGGCAAAATGAAAGGTTCACCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTGCGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAGTTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGACTGGAAAAAACGGTTGTCAATCATTGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTAGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTACGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTGGAAATAATCTGTGGTCGGAGGAATACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGAAGGTAGAGCGATTGAACTTCTTGACCCGTATATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCTCCAGCGTATAGGCCAACATTGCAATCCTTGGTACTAATGCTAGAGAGTGAATCTACATCTCTACCACAGCCAAGACAACCCACCTATACTTCAACAAGAGCCTCGATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACATAACAGTAACAATGTTGGATGGTAGATAG 2580 42.36 MGNNCRKVVGFLQFFVISFLLCFSPLFCDAANSFTKGRGLRDGTNETLISLNESYELGFFSPINSSSRYVGIWYHKIEEQSVIWVANRDRPLLNRDGVLTIGDDGNLVVLDGNNVSFWTSNITANAFDPRNLTLHNHGELVLTSGDDSSKVHWSSFEHPTDTFLPNMEVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPNMRSTSLYGFKITPENGNTISVTFQALNDSDKLKFQIMWNGKEAQQRLNEANRKWETIRLLPSSDCDFYNFCGDFGVCSETSRPKCSCPQGFIPKNKEQWDRGTWSDGCQRKTPLLQERMNSNPNGTIEDGEEDGFVPVPFVKLPDFITGVVVDSCRDRCSNSSSCVAYSDAPGIGCATWDGPLKDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGAAAAIAIIAFLLWKFGGKMKGSPAASSSEPQNKTEVPMFDLSKSRELSAELSGPYELGIEGEQLSGPDLPMFNFNCIVAATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEIICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPYISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDITVTMLDGR 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35927636 35930953 - ClCG01G022370.2 Cla01g02190 265779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02190 859 Pfam Protein tyrosine and serine/threonine kinase 544 810 IPR001245 GO:0004672|GO:0006468
Cla01g02190 859 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cla01g02190 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Cla01g02190 859 CDD PAN_AP_plant 360 433 - -
Cla01g02190 859 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Cla01g02190 859 SUPERFAMILY Protein kinase-like (PK-like) 526 836 IPR011009 -
Cla01g02190 859 Pfam PAN-like domain 363 417 IPR003609 -
Cla01g02190 859 SMART serkin_6 541 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02190 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Cla01g02190 859 CDD STKc_IRAK 547 813 - -
Cla01g02190 859 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02190 859 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Cla01g02190 859 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Cla01g02190 859 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 14 859 - -
Cla01g02190 859 PIRSF SRK 5 859 IPR024171 GO:0004674
Cla01g02190 859 Pfam Domain of unknown function (DUF3403) 814 859 IPR021820 GO:0004674
Cla01g02190 859 CDD B_lectin 43 159 IPR001480 -
Cla01g02190 859 Gene3D - 29 156 IPR036426 -
Cla01g02190 859 SMART blect_4 39 159 IPR001480 -
Cla01g02190 859 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 859 - -
Cla01g02190 859 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02190 Cla-Chr1:35927636 Cla03g00496 Cla-Chr3:5524353 0 dispersed
Cla07g00571 Cla-Chr7:9749949 Cla01g02190 Cla-Chr1:35927636 7.75E-101 transposed
Cla01g02190 Cla-Chr1:35927636 Cla02g00145 Cla-Chr2:1583759 7.15E-148 wgd
Cla01g02190 Cla-Chr1:35927636 Cla03g00505 Cla-Chr3:5585575 0 wgd
Cla01g02190 Cla-Chr1:35927636 Cla05g01568 Cla-Chr5:26537136 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80300 PF07714 PK_Tyr_Ser-Thr 3.50E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02190 - - csv:101207147 1572.37