Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02225 TCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGATTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGAACTCTTACAAATGCTGTAG 1818 44.22 SLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGIPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36225544 36228587 - ClCG01G022710.1 Cla01g02225 265814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02225 605 MobiDBLite consensus disorder prediction 194 282 - -
Cla01g02225 605 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 1 605 - -
Cla01g02225 605 PANTHER LEUCINE RICH REPEAT KINASE 2 1 605 - -
Cla01g02225 605 Gene3D Phosphorylase Kinase; domain 1 296 406 - -
Cla01g02225 605 Pfam Protein tyrosine and serine/threonine kinase 333 601 IPR001245 GO:0004672|GO:0006468
Cla01g02225 605 MobiDBLite consensus disorder prediction 194 260 - -
Cla01g02225 605 Gene3D Transferase(Phosphotransferase) domain 1 407 605 - -
Cla01g02225 605 SUPERFAMILY L domain-like 2 91 - -
Cla01g02225 605 ProSiteProfiles Protein kinase domain profile. 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02225 605 SUPERFAMILY Protein kinase-like (PK-like) 306 601 IPR011009 -
Cla01g02225 605 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02225 - - - cmo:103484543 1050.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02225 Cla-Chr1:36225544 Cla08g00508 Cla-Chr8:15265579 6.62E-125 dispersed
Cla01g02225 Cla-Chr1:36225544 Cla02g00126 Cla-Chr2:1403708 1.10E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla01g00957 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla07g01353 . 77 817 Strubbelig Receptor Gene Family AT1G53730 50.4 2.3e-178 622.9
Cla09g00135 . 49 904 Strubbelig Receptor Gene Family AT1G53730 50.5 2.1e-171 599.7
Cla08g00508 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cla01g00957 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.7e-147 518.8
Cla01g02225 . 312 605 Strubbelig Receptor Gene Family AT3G14350 51.2 2.4e-76 283.9
Cla01g00957 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.4e-177 618.2
Cla09g00135 . 538 896 Strubbelig Receptor Gene Family AT4G22130 57.4 2.2e-112 403.3
Cla07g01353 . 509 824 Strubbelig Receptor Gene Family AT4G22130 60.1 1.8e-109 393.7
Cla02g00126 . 427 720 Strubbelig Receptor Gene Family AT4G22130 60.7 1.7e-104 377.1
Cla08g00508 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.3e-99 360.9
Cla01g02225 . 317 605 Strubbelig Receptor Gene Family AT4G22130 59.8 4.8e-99 359.0
Cla10g01655 . 374 696 Strubbelig Receptor Gene Family AT4G22130 51.7 9.7e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80301 PF07714 PK_Tyr_Ser-Thr 9.10E-38 CL0016 Cla PK