Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02255 ATGGACGACCACCACAATCCCCACCACCACCACCACCACCACCACCACCATGAACTCCCCCCATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTAGTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAAAGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTTATAATGATGAATATTCTAAGGGCTTAACAATAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTCAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCGAGAATGGAAGAAAATAACAAGCAGCAGCAGCAGCAGCAGCAGCAGTGTGGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCCTGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTGCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGCGACTAATACTAATTACAAGGAAGTAATGGAGGATCTGCAGGGGATTAATAACAACAACAACAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTATTTCAGCAACAATGATAGAACGTGA 1305 43.68 MDDHHNPHHHHHHHHHHELPPFPSAAAILHSPPPPPPQNSCYLPPSLSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPKDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCYNDEYSKGLTITHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENNKQQQQQQQQCGNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGATIKGNYNNINNNNNATNTNYKEVMEDLQGINNNNNNNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36484598 36488212 - ClCG01G023070.1 Cla01g02255 265844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02255 434 CDD B3_DNA 183 279 IPR003340 GO:0003677
Cla01g02255 434 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 60 422 - -
Cla01g02255 434 Coils Coil 377 397 - -
Cla01g02255 434 MobiDBLite consensus disorder prediction 26 42 - -
Cla01g02255 434 Pfam B3 DNA binding domain 186 281 IPR003340 GO:0003677
Cla01g02255 434 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 422 IPR044800 GO:0003700
Cla01g02255 434 MobiDBLite consensus disorder prediction 285 306 - -
Cla01g02255 434 MobiDBLite consensus disorder prediction 1 42 - -
Cla01g02255 434 SMART B3_2 184 285 IPR003340 GO:0003677
Cla01g02255 434 SUPERFAMILY DNA-binding pseudobarrel domain 183 281 IPR015300 -
Cla01g02255 434 ProSiteProfiles B3 DNA-binding domain profile. 184 285 IPR003340 GO:0003677
Cla01g02255 434 Gene3D - 173 299 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02255 Cla-Chr1:36484598 Cla09g00858 Cla-Chr9:8807601 3.32E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60514 PF02362 B3 7.30E-16 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02255 - - csv:105436043 511.916